RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.98_1
         (37 letters)



>gnl|CDD|36176 KOG0958, KOG0958, KOG0958, DNA damage-responsive repressor
           GIS1/RPH1, jumonji superfamily [Replication,
           recombination and repair].
          Length = 690

 Score = 24.2 bits (52), Expect = 8.1
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 12  TKRLEKIMNDFFSGGSR 28
             R EK+ ++ F   S+
Sbjct: 217 GDRFEKLASELFPDSSQ 233


>gnl|CDD|35549 KOG0328, KOG0328, KOG0328, Predicted ATP-dependent RNA helicase
           FAL1, involved in rRNA maturation, DEAD-box superfamily
           [Translation, ribosomal structure and biogenesis].
          Length = 400

 Score = 24.1 bits (52), Expect = 9.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 13  KRLEKIMNDFFSGGSRI 29
           K  +KIMNDF SG SR+
Sbjct: 303 KERDKIMNDFRSGKSRV 319


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 412,156
Number of extensions: 10105
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 37
Length of database: 6,263,737
Length adjustment: 11
Effective length of query: 26
Effective length of database: 6,026,038
Effective search space: 156676988
Effective search space used: 156676988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)