RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.98_1 (37 letters) >gnl|CDD|36176 KOG0958, KOG0958, KOG0958, DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]. Length = 690 Score = 24.2 bits (52), Expect = 8.1 Identities = 5/17 (29%), Positives = 9/17 (52%) Query: 12 TKRLEKIMNDFFSGGSR 28 R EK+ ++ F S+ Sbjct: 217 GDRFEKLASELFPDSSQ 233 >gnl|CDD|35549 KOG0328, KOG0328, KOG0328, Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]. Length = 400 Score = 24.1 bits (52), Expect = 9.3 Identities = 11/17 (64%), Positives = 13/17 (76%) Query: 13 KRLEKIMNDFFSGGSRI 29 K +KIMNDF SG SR+ Sbjct: 303 KERDKIMNDFRSGKSRV 319 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.136 0.383 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 412,156 Number of extensions: 10105 Number of successful extensions: 25 Number of sequences better than 10.0: 1 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 2 Length of query: 37 Length of database: 6,263,737 Length adjustment: 11 Effective length of query: 26 Effective length of database: 6,026,038 Effective search space: 156676988 Effective search space used: 156676988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.8 bits)