BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.98_1
         (37 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.98_1 
          Length = 37

 Score = 75.9 bits (185), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/37 (100%), Positives = 37/37 (100%)

Query: 1  MNNFNLTYLVQTKRLEKIMNDFFSGGSRITNNQFLTD 37
          MNNFNLTYLVQTKRLEKIMNDFFSGGSRITNNQFLTD
Sbjct: 1  MNNFNLTYLVQTKRLEKIMNDFFSGGSRITNNQFLTD 37


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 24.3 bits (51), Expect = 0.38,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 13  KRLEKIMNDFFSGGSRITNNQFL 35
           K LEK++++  S   ++ NNQF+
Sbjct: 890 KSLEKVLDELSSIKKKLENNQFV 912


>gi|254780222|ref|YP_003064635.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 686

 Score = 20.8 bits (42), Expect = 4.7,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 17  KIMNDFFSGGSRITNNQFLTD 37
           KI+N   +G  +I NNQ + D
Sbjct: 495 KILNVASAGSEKIRNNQQIMD 515


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.136    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,364
Number of Sequences: 1233
Number of extensions: 474
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 37
length of database: 328,796
effective HSP length: 11
effective length of query: 26
effective length of database: 315,233
effective search space:  8196058
effective search space used:  8196058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)