Query 537021.9.peg.993_1
Match_columns 52
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 08:15:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_993.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1yrt_A Bifunctional hemolysin 10.2 1.6E+02 0.0047 13.8 1.9 31 8-38 101-133 (147)
2 >3it5_A Protease LASA; metallo 9.3 1.2E+02 0.0034 14.5 0.9 10 2-11 24-33 (36)
3 >1ekg_A Frataxin; freidreich'S 6.3 1.7E+02 0.0049 13.7 0.6 14 5-18 53-66 (127)
4 >2fjl_A 1-phosphatidylinositol 5.9 1.5E+02 0.0046 13.9 0.2 23 13-35 32-54 (54)
5 >3iax_B Colicin-A; TOLB, TOLB 4.2 1.6E+02 0.0048 13.8 -0.6 31 5-39 58-88 (115)
6 >2kes_A Synphilin-1; synphilli 3.9 1.1E+02 0.0032 14.6 -1.7 18 7-24 23-40 (48)
7 >1mky_A Probable GTP-binding p 3.2 3E+02 0.009 12.5 0.0 26 14-39 6-36 (80)
8 >1mkf_A M3; decoy receptor, PS 3.2 4.3E+02 0.013 11.8 0.8 23 23-45 137-159 (172)
9 >2hjg_A GTP-binding protein EN 3.2 3.1E+02 0.0092 12.5 0.0 15 25-39 26-40 (83)
10 >1y08_A Hypothetical protein S 2.8 4.9E+02 0.014 11.6 0.7 10 9-18 1-10 (42)
No 1
>>1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A (A:1-44,A:189-199,A:273-364)
Probab=10.23 E-value=1.6e+02 Score=13.84 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=25.4
Q ss_pred CCCE--EEECHHHHHHHHHHHHHEEEEHHHHHH
Q ss_conf 3423--898157999986123322312643411
Q 537021.9.peg.9 8 TKGK--IIINDQLQLLMENIIKIRYVTQEARSL 38 (52)
Q Consensus 8 tkgk--iiindqlqllmeniikiryvtqearsl 38 (52)
..|+ +.-.+++|.+.+|+++--|+.-+-||.
T Consensus 101 P~GE~~~LTK~dt~~fI~n~~~~GY~fY~NRsY 133 (147)
T 1yrt_A 101 ATGESQMLTRGQLKEYIGQQRGEGYVFYENRAY 133 (147)
T ss_dssp TTSCEEEECHHHHHHHHHHHHHTTBCCCCCTTT
T ss_pred CCCCEEECCHHHHHHHHHHHHHCCCEEEECHHH
T ss_conf 788578806899999999988579568616565
No 2
>>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A* (A:135-170)
Probab=9.29 E-value=1.2e+02 Score=14.47 Aligned_cols=10 Identities=50% Similarity=1.065 Sum_probs=7.3
Q ss_pred CEEEECCCCE
Q ss_conf 4233123423
Q 537021.9.peg.9 2 AYFFNQTKGK 11 (52)
Q Consensus 2 ayffnqtkgk 11 (52)
-||+||..|.
T Consensus 24 ~y~ynqsagt 33 (36)
T 3it5_A 24 YYFYNQSAGT 33 (36)
T ss_dssp SEEEETTTCC
T ss_pred CCEECCCCCE
T ss_conf 3143267873
No 3
>>1ekg_A Frataxin; freidreich'S ataxia, iron transport, mitochondrial, disease, metal transport; 1.80A {Homo sapiens} (A:)
Probab=6.34 E-value=1.7e+02 Score=13.74 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=8.7
Q ss_pred EECCCCEEEECHHH
Q ss_conf 31234238981579
Q 537021.9.peg.9 5 FNQTKGKIIINDQL 18 (52)
Q Consensus 5 fnqtkgkiiindql 18 (52)
|...+|++|||.|-
T Consensus 53 f~~~~~~~VINkQ~ 66 (127)
T 1ekg_A 53 LGGDLGTYVINKQT 66 (127)
T ss_dssp CCTTCCEEEEEEEG
T ss_pred ECCCCCEEEEECCC
T ss_conf 86999789995898
No 4
>>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} (A:97-150)
Probab=5.94 E-value=1.5e+02 Score=13.90 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=18.0
Q ss_pred EECHHHHHHHHHHHHHEEEEHHH
Q ss_conf 98157999986123322312643
Q 537021.9.peg.9 13 IINDQLQLLMENIIKIRYVTQEA 35 (52)
Q Consensus 13 iindqlqllmeniikiryvtqea 35 (52)
+-.|.+.-|-+-+.|||-++|.|
T Consensus 32 vaAds~Eel~dWv~KIREaaqta 54 (54)
T 2fjl_A 32 VAADSQEELQDWVKKIREVAQTA 54 (54)
T ss_dssp EEESSHHHHHHHHHHHHHHHTTC
T ss_pred EEECCHHHHHHHHHHHHHHHHCC
T ss_conf 87254999999999999998429
No 5
>>3iax_B Colicin-A; TOLB, TOLB BOX, complex, periplasm, protein transport, transport, antibiotic, antimicrobial, bacteriocin, cell membrane, membrane; 2.60A {Citrobacter freundii} (B:)
Probab=4.24 E-value=1.6e+02 Score=13.80 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=21.9
Q ss_pred EECCCCEEEECHHHHHHHHHHHHHEEEEHHHHHHH
Q ss_conf 31234238981579999861233223126434112
Q 537021.9.peg.9 5 FNQTKGKIIINDQLQLLMENIIKIRYVTQEARSLL 39 (52)
Q Consensus 5 fnqtkgkiiindqlqllmeniikiryvtqearsll 39 (52)
+|..-|++|||+.-|-.|..|+ .|.|..||.
T Consensus 58 ynTPWG~ViIN~~G~P~MNGiV----MTeeNSslV 88 (115)
T 3iax_B 58 YNTPWGKVIINAAGQPTMNGTV----MTADNSSMV 88 (115)
T ss_pred CCCCCCEEEECCCCCCCCCCEE----EECCCCCCC
T ss_conf 4477631788689971124358----853566212
No 6
>>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parkinson disease, phosphoprotein, polymorphism, UBL conjugation; NMR {Homo sapiens} (A:)
Probab=3.93 E-value=1.1e+02 Score=14.60 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=12.0
Q ss_pred CCCCEEEECHHHHHHHHH
Q ss_conf 234238981579999861
Q 537021.9.peg.9 7 QTKGKIIINDQLQLLMEN 24 (52)
Q Consensus 7 qtkgkiiindqlqllmen 24 (52)
||...+-...|||.|||.
T Consensus 23 Qt~~Rv~LQ~qLQ~lle~ 40 (48)
T 2kes_A 23 QTVERVTLQNQLQQFLEA 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999743
No 7
>>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} (A:360-439)
Probab=3.22 E-value=3e+02 Score=12.55 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=15.4
Q ss_pred ECHHHHHHHHH-----HHHHEEEEHHHHHHH
Q ss_conf 81579999861-----233223126434112
Q 537021.9.peg.9 14 INDQLQLLMEN-----IIKIRYVTQEARSLL 39 (52)
Q Consensus 14 indqlqllmen-----iikiryvtqearsll 39 (52)
+|+-|+..++. -+||.|+||..-.--
T Consensus 6 LN~~l~~~~~~~pppk~~ki~Y~tQ~~~~PP 36 (80)
T 1mky_A 6 INSALQKVLAFTNLPRGLKIFFGVQVDIKPP 36 (80)
T ss_dssp HHHHHHHHHTTCCCSTTCCEEEEEEEETTTT
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 9999999997279998852599982799998
No 8
>>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid herpesvirus 4} (A:211-382)
Probab=3.21 E-value=4.3e+02 Score=11.83 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=18.8
Q ss_pred HHHHHHEEEEHHHHHHHCEEEEE
Q ss_conf 61233223126434112465576
Q 537021.9.peg.9 23 ENIIKIRYVTQEARSLLGITLIK 45 (52)
Q Consensus 23 eniikiryvtqearsllgitlik 45 (52)
||....||+......+.||++.-
T Consensus 137 q~VL~~~~~~~~~~~lVGvsl~~ 159 (172)
T 1mkf_A 137 QNVLQVRVAPTSMPNLVGVSLML 159 (172)
T ss_dssp TTEEEEEECGGGGGGEEEEEEEE
T ss_pred CEEEEEEECCCCCCCEEEEEEEE
T ss_conf 14899998246676405699997
No 9
>>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:354-436)
Probab=3.15 E-value=3.1e+02 Score=12.50 Aligned_cols=15 Identities=33% Similarity=0.259 Sum_probs=9.3
Q ss_pred HHHHEEEEHHHHHHH
Q ss_conf 233223126434112
Q 537021.9.peg.9 25 IIKIRYVTQEARSLL 39 (52)
Q Consensus 25 iikiryvtqearsll 39 (52)
-+||.|+||-.-.-.
T Consensus 26 ~~Ki~Y~tQ~~~~PP 40 (83)
T 2hjg_A 26 RLKIYYATQVSVKPP 40 (83)
T ss_dssp ECCEEEEEEEETTTT
T ss_pred EEEEEEEEECCCCCC
T ss_conf 226998980799999
No 10
>>1y08_A Hypothetical protein SPY0861; cysteine proteinase, papain-like fold with major insertions, hydrolase; 1.93A {Streptococcus pyogenes} (A:108-149)
Probab=2.78 E-value=4.9e+02 Score=11.60 Aligned_cols=10 Identities=40% Similarity=0.388 Sum_probs=6.4
Q ss_pred CCEEEECHHH
Q ss_conf 4238981579
Q 537021.9.peg.9 9 KGKIIINDQL 18 (52)
Q Consensus 9 kgkiiindql 18 (52)
|-||+.|+|-
T Consensus 1 kqki~f~~qe 10 (42)
T 1y08_A 1 KQKINFNGEQ 10 (42)
T ss_dssp GSEEEETTEE
T ss_pred CCCCCCCCCH
T ss_conf 5421457620
Done!