Query 537021.9.peg.993_1
Match_columns 52
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 04:28:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_993.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5p_A Protein BAS0735 of unkn 11.8 31 0.0013 16.4 -0.6 12 21-32 3-14 (197)
2 2ahq_A Sigma-54, RNA polymeras 5.6 1.7E+02 0.0071 13.0 1.0 28 1-28 4-31 (76)
3 2kes_A Synphilin-1; synphillin 3.5 88 0.0037 14.3 -1.7 18 7-24 23-40 (48)
4 1ekg_A Frataxin; freidreich'S 3.2 2.7E+02 0.011 12.1 0.6 10 8-17 56-65 (127)
5 2jx8_A Hpcif1, phosphorylated 3.0 3.3E+02 0.014 11.7 1.1 11 2-12 26-36 (52)
6 3iax_B Colicin-A; TOLB, TOLB B 2.3 2.5E+02 0.011 12.2 -0.5 31 5-39 58-88 (115)
7 2w9h_A DHFR, dihydrofolate red 2.0 2E+02 0.0083 12.7 -1.4 16 1-16 29-44 (159)
8 2g7o_A Protein TRAM; four heli 1.9 4.4E+02 0.018 11.1 0.3 17 18-34 10-26 (70)
9 3jwk_A Dihydrofolate reductase 1.7 1.9E+02 0.0081 12.7 -1.9 13 2-14 36-48 (168)
10 1zdr_A Dihydrofolate reductase 1.6 2.5E+02 0.01 12.3 -1.4 14 1-14 28-41 (164)
No 1
>3c5p_A Protein BAS0735 of unknown function; 2-layer beta-sheet, structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus anthracis str}
Probab=11.77 E-value=31 Score=16.41 Aligned_cols=12 Identities=58% Similarity=0.653 Sum_probs=8.6
Q ss_pred HHHHHHHHEEEE
Q ss_conf 986123322312
Q 537021.9.peg.9 21 LMENIIKIRYVT 32 (52)
Q Consensus 21 lmeniikiryvt 32 (52)
.|.||+||||-+
T Consensus 3 ~m~~~~k~r~sv 14 (197)
T 3c5p_A 3 AMTNIIKIRASV 14 (197)
T ss_dssp -CCCEEEEEEEE
T ss_pred CCEEEEEEEEEE
T ss_conf 101267887678
No 2
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=5.61 E-value=1.7e+02 Score=13.02 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=19.3
Q ss_pred CCEEEECCCCEEEECHHHHHHHHHHHHH
Q ss_conf 9423312342389815799998612332
Q 537021.9.peg.9 1 MAYFFNQTKGKIIINDQLQLLMENIIKI 28 (52)
Q Consensus 1 mayffnqtkgkiiindqlqllmeniiki 28 (52)
|-|||...-|.-+-.+.+.-.+..+|.-
T Consensus 4 lk~FF~~~~~~~~s~~~ik~~ik~lI~~ 31 (76)
T 2ahq_A 4 LRTFFVRESAEGLTQGELMKLIKEIVEN 31 (76)
T ss_dssp CSCCCCCSSCCSCCHHHHHHHHHHHGGG
T ss_pred CHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 2641478999730799999999999996
No 3
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=3.52 E-value=88 Score=14.32 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=11.9
Q ss_pred CCCCEEEECHHHHHHHHH
Q ss_conf 234238981579999861
Q 537021.9.peg.9 7 QTKGKIIINDQLQLLMEN 24 (52)
Q Consensus 7 qtkgkiiindqlqllmen 24 (52)
||...+-...|||.|||.
T Consensus 23 Qt~~Rv~LQ~qlQ~lle~ 40 (48)
T 2kes_A 23 QTVERVTLQNQLQQFLEA 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999743
No 4
>1ekg_A Frataxin; freidreich'S ataxia, iron transport, mitochondrial, disease, metal transport; 1.80A {Homo sapiens} SCOP: d.82.2.1 PDB: 1ly7_A
Probab=3.22 E-value=2.7e+02 Score=12.06 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=5.2
Q ss_pred CCCEEEECHH
Q ss_conf 3423898157
Q 537021.9.peg.9 8 TKGKIIINDQ 17 (52)
Q Consensus 8 tkgkiiindq 17 (52)
.+|++|||-|
T Consensus 56 ~~~~~VINrQ 65 (127)
T 1ekg_A 56 DLGTYVINKQ 65 (127)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEEEECC
T ss_conf 9828999289
No 5
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=3.02 E-value=3.3e+02 Score=11.68 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=7.6
Q ss_pred CEEEECCCCEE
Q ss_conf 42331234238
Q 537021.9.peg.9 2 AYFFNQTKGKI 12 (52)
Q Consensus 2 ayffnqtkgki 12 (52)
.||||.-.|.-
T Consensus 26 pY~fNk~TgeS 36 (52)
T 2jx8_A 26 PYYFNRFTNQS 36 (52)
T ss_dssp EEEEETTTTEE
T ss_pred CCEEECCCCCC
T ss_conf 60345036750
No 6
>3iax_B Colicin-A; TOLB, TOLB BOX, complex, periplasm, protein transport, transport, antibiotic, antimicrobial, bacteriocin, cell membrane, membrane; 2.60A {Citrobacter freundii}
Probab=2.26 E-value=2.5e+02 Score=12.22 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=21.6
Q ss_pred EECCCCEEEECHHHHHHHHHHHHHEEEEHHHHHHH
Q ss_conf 31234238981579999861233223126434112
Q 537021.9.peg.9 5 FNQTKGKIIINDQLQLLMENIIKIRYVTQEARSLL 39 (52)
Q Consensus 5 fnqtkgkiiindqlqllmeniikiryvtqearsll 39 (52)
+|..-|++|||+.-+-.|..|+ .|.|..||.
T Consensus 58 y~tpwg~viin~~g~p~mng~v----mte~nsslv 88 (115)
T 3iax_B 58 YNTPWGKVIINAAGQPTMNGTV----MTADNSSMV 88 (115)
T ss_pred CCCCCCEEEECCCCCCCCCCEE----EECCCCCCC
T ss_conf 3477620778689970024258----853576211
No 7
>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* 3f0q_X* 3fqc_A* 3fqz_A* 3m08_A* 3f0u_X* 3f0v_X* 3f0x_X* ...
Probab=2.00 E-value=2e+02 Score=12.72 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=8.7
Q ss_pred CCEEEECCCCEEEECH
Q ss_conf 9423312342389815
Q 537021.9.peg.9 1 MAYFFNQTKGKIIIND 16 (52)
Q Consensus 1 mayffnqtkgkiiind 16 (52)
|.+|-..|.|+.+|-.
T Consensus 29 l~~Fk~~T~~~~vimG 44 (159)
T 2w9h_A 29 LKHVKKLSTGHTLVMG 44 (159)
T ss_dssp HHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCEEEEE
T ss_conf 9999985579739996
No 8
>2g7o_A Protein TRAM; four helix bundle, tetramer, DNA binding protein; 1.40A {Escherichia coli} SCOP: a.241.1.1 PDB: 3d8a_A 2g9e_A
Probab=1.92 E-value=4.4e+02 Score=11.12 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHEEEEHH
Q ss_conf 99998612332231264
Q 537021.9.peg.9 18 LQLLMENIIKIRYVTQE 34 (52)
Q Consensus 18 lqllmeniikiryvtqe 34 (52)
-.++.||++|.+....+
T Consensus 10 NKvlLEnv~Ktq~~~sk 26 (70)
T 2g7o_A 10 NKLLLECVVKTQSSVAK 26 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999
No 9
>3jwk_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5WB; 2.08A {Bacillus anthracis} PDB: 3jw5_A* 3jwf_A* 3jwc_A* 3jvx_A* 3jwm_A* 3jw3_A* 3e0b_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=1.72 E-value=1.9e+02 Score=12.75 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=6.3
Q ss_pred CEEEECCCCEEEE
Q ss_conf 4233123423898
Q 537021.9.peg.9 2 AYFFNQTKGKIII 14 (52)
Q Consensus 2 ayffnqtkgkiii 14 (52)
.+|-..|.|+.+|
T Consensus 36 ~~Fk~~T~g~~vi 48 (168)
T 3jwk_A 36 QYVKKTTMGHPLI 48 (168)
T ss_dssp HHHHHHHTTSCEE
T ss_pred HHHHHHHCCCEEE
T ss_conf 9999982898099
No 10
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=1.64 E-value=2.5e+02 Score=12.25 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=0.0
Q ss_pred CCEEEECCCCEEEE
Q ss_conf 94233123423898
Q 537021.9.peg.9 1 MAYFFNQTKGKIII 14 (52)
Q Consensus 1 mayffnqtkgkiii 14 (52)
|++|-..|.|+.+|
T Consensus 28 l~~Fk~~T~~~~vi 41 (164)
T 1zdr_A 28 LAYFKRVTMGHAIV 41 (164)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99999865897899
Done!