RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.993_1 (52 letters) >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 24.4 bits (54), Expect = 6.6 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 7/35 (20%) Query: 9 KGKIIINDQLQLLMENII-------KIRYVTQEAR 36 KG+I++N ++ E I +I YV Q+AR Sbjct: 52 KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR 86 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.329 0.143 0.375 Gapped Lambda K H 0.267 0.0599 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 797,206 Number of extensions: 34286 Number of successful extensions: 89 Number of sequences better than 10.0: 1 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 10 Length of query: 52 Length of database: 5,994,473 Length adjustment: 25 Effective length of query: 27 Effective length of database: 5,454,273 Effective search space: 147265371 Effective search space used: 147265371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.3 bits)