RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.993_1
         (52 letters)



>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 266

 Score = 27.4 bits (59), Expect = 0.33
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 3/26 (11%)

Query: 23 ENIIKIRYVTQEARSLLGITLIKINR 48
          E+ +++R++ +E R   GI ++ INR
Sbjct: 1  EDELRVRHLEEENR---GIVVLGINR 23


>d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid
           herpesvirus 4, MuHV-4 [TaxId: 33708]}
          Length = 371

 Score = 24.3 bits (52), Expect = 2.7
 Identities = 5/22 (22%), Positives = 15/22 (68%)

Query: 23  ENIIKIRYVTQEARSLLGITLI 44
           +N++++R       +L+G++L+
Sbjct: 336 QNVLQVRVAPTSMPNLVGVSLM 357


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.375 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 179,705
Number of extensions: 5728
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 3
Length of query: 52
Length of database: 2,407,596
Length adjustment: 23
Effective length of query: 29
Effective length of database: 2,091,806
Effective search space: 60662374
Effective search space used: 60662374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.4 bits)