RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.993_1 (52 letters) >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 Score = 27.4 bits (59), Expect = 0.33 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 3/26 (11%) Query: 23 ENIIKIRYVTQEARSLLGITLIKINR 48 E+ +++R++ +E R GI ++ INR Sbjct: 1 EDELRVRHLEEENR---GIVVLGINR 23 >d1mkfa_ b.116.1.1 (A:) Viral chemokine binding protein m3 {Murid herpesvirus 4, MuHV-4 [TaxId: 33708]} Length = 371 Score = 24.3 bits (52), Expect = 2.7 Identities = 5/22 (22%), Positives = 15/22 (68%) Query: 23 ENIIKIRYVTQEARSLLGITLI 44 +N++++R +L+G++L+ Sbjct: 336 QNVLQVRVAPTSMPNLVGVSLM 357 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.329 0.143 0.375 Gapped Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 179,705 Number of extensions: 5728 Number of successful extensions: 24 Number of sequences better than 10.0: 1 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 3 Length of query: 52 Length of database: 2,407,596 Length adjustment: 23 Effective length of query: 29 Effective length of database: 2,091,806 Effective search space: 60662374 Effective search space used: 60662374 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 47 (22.4 bits)