BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.993_1
         (52 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.993_1 
          Length = 52

 Score =  102 bits (255), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/52 (100%), Positives = 52/52 (100%)

Query: 1  MAYFFNQTKGKIIINDQLQLLMENIIKIRYVTQEARSLLGITLIKINRLATL 52
          MAYFFNQTKGKIIINDQLQLLMENIIKIRYVTQEARSLLGITLIKINRLATL
Sbjct: 1  MAYFFNQTKGKIIINDQLQLLMENIIKIRYVTQEARSLLGITLIKINRLATL 52


>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 21.2 bits (43), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 20  LLMENIIKIRYVTQEARSLLGIT 42
           LL E +  IR+ TQ+  S  G+ 
Sbjct: 220 LLKEGVYAIRFRTQDQTSYSGVA 242


>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 20.0 bits (40), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 4  FFNQTKGKIIINDQLQLLMENIIKIRYVTQEARSLLGITLIKIN 47
           FN +  ++    Q+ L +E   + +   + A  LLG+ +I IN
Sbjct: 36 HFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ 79


>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 503

 Score = 19.6 bits (39), Expect = 9.7,   Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 3   YFFNQTKG 10
           YFFN+T+G
Sbjct: 194 YFFNKTRG 201


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.143    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,653
Number of Sequences: 1233
Number of extensions: 660
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 52
length of database: 328,796
effective HSP length: 25
effective length of query: 27
effective length of database: 297,971
effective search space:  8045217
effective search space used:  8045217
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.3 bits)
S2: 31 (16.5 bits)