MALIDUP

MALIDUP is a database of pairwise, structure-base alignments for homologous domains originated from internal duplication.

Reference: H. Cheng, B. Kim, and N. Grishin (2008). MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs. Proteins: Structure, Function, and Bioinformatics. 70:1162-1166

The table below lists all the duplicated domain pairs in this database. The manual and automatic alignments and superpositions can be viewed by clicking the pair names in the 2nd column.

#	PAIR	SCOPid	RANGE	SCOP CLASS	SCOP FOLD	SCOP SUPERFAMILY
1	d19hca_	d19hca_	A1-A135	all a	Multiheme cytochromes	Multiheme cytochromes
1	d19hca_	d19hca_	A169-A292	all a	Multiheme cytochromes	Multiheme cytochromes
2	d1a4pa_	d1a4pa_	A1-A45	all a	EF Hand-like	EF-hand
2	d1a4pa_	d1a4pa_	A46-A92	all a	EF Hand-like	EF-hand
3	d1a4sa_	d1a4sa_	A152-A265	a/b	ALDH-like	ALDH-like
3	d1a4sa_	d1a4sa_	A266-A462	a/b	ALDH-like	ALDH-like
4	d1a6da1	d1a6da1	A17-A49,A50-A118	all a	GroEL equatorial domain-like	GroEL equatorial domain-like
4	d1a6da1	d1a6da1	A119-A145,A404-A519	all a	GroEL equatorial domain-like	GroEL equatorial domain-like
5	d1a8l_1	d1a8l_1	A1-A119	a/b	Thioredoxin fold	Thioredoxin-like
5	d1a8l_1	d1a8l_2	A120-A226	a/b	Thioredoxin fold	Thioredoxin-like
6	d1af2a1	d1af2a1	A1-A150	a/b	Cytidine deaminase-like	Cytidine deaminase-like
6	d1af2a1	d1af2a2	A151-A294	a/b	Cytidine deaminase-like	Cytidine deaminase-like
7	d1afwb1	d1afwb1	B25-B295	a/b	Thiolase-like	Thiolase-like
7	d1afwb1	d1afwb2	B296-B417	a/b	Thiolase-like	Thiolase-like
8	d1ahja_	d1ahja_	A10-A119	a+b	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain
8	d1ahja_	d1ahja_	A120-A207	a+b	Nitrile hydratase alpha chain	Nitrile hydratase alpha chain
9	d1ahua1	d1ahua1	A274-A419	a+b	Ferredoxin-like	FAD-linked oxidases, C-terminal domain
9	d1ahua1	d1ahua1	A420-A560	a+b	Ferredoxin-like	FAD-linked oxidases, C-terminal domain
10	d1ai3__	d1ai3__	A3-A220	a/b	Isocitrate/Isopropylmalate dehydrogenase-like	Isocitrate/Isopropylmalate dehydrogenase-like
10	d1ai3__	d1ai3__	A221-A416	a/b	Isocitrate/Isopropylmalate dehydrogenase-like	Isocitrate/Isopropylmalate dehydrogenase-like
11	d1aj8a_	d1aj8a_	A6-A149	all a	Citrate synthase	Citrate synthase
11	d1aj8a_	d1aj8a_	A150-A376	all a	Citrate synthase	Citrate synthase
12	d1ako__	d1ako__	A1-A102	a+b	DNase I-like	DNase I-like
12	d1ako__	d1ako__	A103-A268	a+b	DNase I-like	DNase I-like
13	d1ala___1	d1ala__	3-87	all a	Annexin	Annexin
13	d1ala___1	d1ala__	88-161	all a	Annexin	Annexin
14	d1ala___2	d1ala__	88-161	all a	Annexin	Annexin
14	d1ala___2	d1ala__	162-245	all a	Annexin	Annexin
15	d1ala___3	d1ala__	160-245	all a	Annexin	Annexin
15	d1ala___3	d1ala__	246-318	all a	Annexin	Annexin
16	d1ala___4	d1ala__	3-87	all a	Annexin	Annexin
16	d1ala___4	d1ala__	246-318	all a	Annexin	Annexin
17	d1anv_2	d1anv_2	A266-A385	small	Zn-binding domains of ADDBP	Zn-binding domains of ADDBP
17	d1anv_2	d1anv_3	A386-A529	small	Zn-binding domains of ADDBP	Zn-binding domains of ADDBP
18	d1aoa_1	d1aoa_1	121-251	all a	CH domain-like	Calponin-homology domain, CH-domain
18	d1aoa_1	d1aoa_2	260-375	all a	CH domain-like	Calponin-homology domain, CH-domain
19	d1aora2	d1aora2	A1-A117	a+b	Aldehyde ferredoxin oxidoreductase, N-terminal domain	Aldehyde ferredoxin oxidoreductase, N-terminal domain
19	d1aora2	d1aora2	A118-A210	a+b	Aldehyde ferredoxin oxidoreductase, N-terminal domain	Aldehyde ferredoxin oxidoreductase, N-terminal domain
20	d1at0__	d1at0__	A258-A323	all b	Hedgehog/intein (Hint) domain	Hedgehog/intein (Hint) domain
20	d1at0__	d1at0__	A324-A402	all b	Hedgehog/intein (Hint) domain	Hedgehog/intein (Hint) domain
21	d1avk_2	d1avk_2	A9-A96	a+b	Cystatin-like	Amine oxidase N-terminal region
21	d1avk_2	d1avk_3	A97-A211	a+b	Cystatin-like	Amine oxidase N-terminal region
22	d1b24a1	d1b24a1	A7-A103	a+b	Homing endonuclease-like	Homing endonucleases
22	d1b24a1	d1b24a2	A104-A178	a+b	Homing endonuclease-like	Homing endonucleases
23	d1b3qa2	d1b3qa2	A540-A599	all b	OB-fold	CheW-like
23	d1b3qa2	d1b3qa2	A600-A671	all b	OB-fold	CheW-like
24	d1b65a_	d1b65a_	A9-A193	a+b	DmpA/ArgJ-like	DmpA/ArgJ-like
24	d1b65a_	d1b65a_	A194-A375	a+b	DmpA/ArgJ-like	DmpA/ArgJ-like
25	d1b70b2	d1b7yb1	B1-B38,B152-B190	all a	Putative DNA-binding domain	Putative DNA-binding domain
25	d1b70b2	d1b7yb2	B400-B439,B440-B474	all a	Putative DNA-binding domain	Putative DNA-binding domain
26	d1b77a1	d1b77a1	A1-A104	a+b	DNA clamp	DNA clamp
26	d1b77a1	d1b77a2	A105-A228	a+b	DNA clamp	DNA clamp
27	d1ba3__	d1ba3__	A3-A177	multi	Acetyl-CoA synthetase-like	Acetyl-CoA synthetase-like
27	d1ba3__	d1ba3__	A178-A333	multi	Acetyl-CoA synthetase-like	Acetyl-CoA synthetase-like
28	d1bj5_1_1	d1bj5_1	3-196	all a	Serum albumin-like	Serum albumin-like
28	d1bj5_1_1	d1bj5_2	197-388	all a	Serum albumin-like	Serum albumin-like
29	d1bj5_1_2	d1bj5_2	197-388	all a	Serum albumin-like	Serum albumin-like
29	d1bj5_1_2	d1bj5_3	389-584	all a	Serum albumin-like	Serum albumin-like
30	d1bj5_1_3	d1bj5_1	3-196	all a	Serum albumin-like	Serum albumin-like
30	d1bj5_1_3	d1bj5_3	389-584	all a	Serum albumin-like	Serum albumin-like
31	d1bmlc1	d1bmlc1	C12-C148	a+b	beta-Grasp (ubiquitin-like)	Staphylokinase/streptokinase
31	d1bmlc1	d1bmlc2	C149-C284	a+b	beta-Grasp (ubiquitin-like)	Staphylokinase/streptokinase
32	d1boy_1	d1boy_1	A5-A106	all b	Immunoglobulin-like beta-sandwich	Fibronectin type III
32	d1boy_1	d1boy_2	A107-A213	all b	Immunoglobulin-like beta-sandwich	Fibronectin type III
33	d1bp1_1	d1bp1_1	A1-A240	a+b	Aha1/BPI domain-like	Bactericidal permeability-increasing protein, BPI
33	d1bp1_1	d1bp1_2	A241-A456	a+b	Aha1/BPI domain-like	Bactericidal permeability-increasing protein, BPI
34	d1bwza1	d1bwza1	A1-A144	a+b	Diaminopimelate epimerase-like	Diaminopimelate epimerase-like
34	d1bwza1	d1bwza2	A145-A274	a+b	Diaminopimelate epimerase-like	Diaminopimelate epimerase-like
35	d1bxra3	d1bxra3	A1-A127	a/b	PreATP-grasp domain	PreATP-grasp domain
35	d1bxra3	d1bxra4	A556-A676	a/b	PreATP-grasp domain	PreATP-grasp domain
36	d1bxra5	d1bxra5	A128-A402	a+b	ATP-grasp	Glutathione synthetase ATP-binding domain-like
36	d1bxra5	d1bxra6	A677-A935	a+b	ATP-grasp	Glutathione synthetase ATP-binding domain-like
37	d1c3ga1	d1c3ga1	A180-A261	all b	HSP40/DnaJ peptide-binding domain	HSP40/DnaJ peptide-binding domain
37	d1c3ga1	d1c3ga2	A266-A340	all b	HSP40/DnaJ peptide-binding domain	HSP40/DnaJ peptide-binding domain
38	d1c3ma__1	d1c3ma_	A3-A26,A125-A147	all b	beta-Prism I	Mannose-binding lectins
38	d1c3ma__1	d1c3ma_	A52-A75,A27-A51	all b	beta-Prism I	Mannose-binding lectins
39	d1c3ma__2	d1c3ma_	A27-A75	all b	beta-Prism I	Mannose-binding lectins
39	d1c3ma__2	d1c3ma_	A76-A124	all b	beta-Prism I	Mannose-binding lectins
40	d1c3ma__3	d1c3ma_	A3-A26,A125-A147	all b	beta-Prism I	Mannose-binding lectins
40	d1c3ma__3	d1c3ma_	A104-A124,A76-A103	all b	beta-Prism I	Mannose-binding lectins
41	d1c8ua1	d1c8ua1	A2-A115	a+b	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase
41	d1c8ua1	d1c8ua2	A116-A286	a+b	Thioesterase/thiol ester dehydrase-isomerase	Thioesterase/thiol ester dehydrase-isomerase
42	d1c8vb_	d1c8vb_	B83-B194	a/b	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes
42	d1c8vb_	d1c8vb_	B195-B389	a/b	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes
43	d1c9ya1	d1c9ya1	A34-A186	a/b	ATC-like	Aspartate/ornithine carbamoyltransferase
43	d1c9ya1	d1c9ya2	A187-A354	a/b	ATC-like	Aspartate/ornithine carbamoyltransferase
44	d1cdwa1	d1cdwa1	A155-A242	a+b	TBP-like	TATA-box binding protein-like
44	d1cdwa1	d1cdwa2	A243-A333	a+b	TBP-like	TATA-box binding protein-like
45	d1ce8a1	d1ce8a1	A414-A468	all a	Carbamoyl phosphate synthetase, large subunit connection domain	Carbamoyl phosphate synthetase, large subunit connection domain
45	d1ce8a1	d1ce8a1	A469-A524	all a
46	d1ciy_2_1	d1ciy_2	A428-A461,A256-A296	all b	beta-Prism I	delta-Endotoxin (insectocide), middle domain
46	d1ciy_2_1	d1ciy_2	A297-A328,A329-A354	all b	beta-Prism I	delta-Endotoxin (insectocide), middle domain
47	d1ciy_2_2	d1ciy_2	A297-A354	all b	beta-Prism I	delta-Endotoxin (insectocide), middle domain
47	d1ciy_2_2	d1ciy_2	A355-A427	all b	beta-Prism I	delta-Endotoxin (insectocide), middle domain
48	d1ciy_2_3	d1ciy_2	A428-A461,A256-A296	all b	beta-Prism I	delta-Endotoxin (insectocide), middle domain
48	d1ciy_2_3	d1ciy_2	A355-A393,A394-A427	all b	beta-Prism I	delta-Endotoxin (insectocide), middle domain
49	d1cjda1	d1cjda1	A15-A244	all b	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP
49	d1cjda1	d1cjda2	A245-A383	all b	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Group II dsDNA viruses VP
50	d1ck7a3	d1ck7a3	A217-A278	small	Kringle-like	Kringle-like
50	d1ck7a3	d1ck7a4	A279-A334	small	Kringle-like	Kringle-like
51	d1ckv__	d1ckv__	A1-A82	a+b	Monooxygenase (hydroxylase) regulatory protein	Monooxygenase (hydroxylase) regulatory protein
51	d1ckv__	d1ckv__	A83-A141	a+b	Monooxygenase (hydroxylase) regulatory protein	Monooxygenase (hydroxylase) regulatory protein
52	d1cpo_1	d1cpo_1	26-106	all a	EF Hand-like	Cloroperoxidase
52	d1cpo_1	d1cpo_2	129-218	all a	EF Hand-like	Cloroperoxidase
53	d1cy8a__1	d1cy8a_	A189-A214,A474-A514,A515-A538	multi	Prokaryotic type I DNA topoisomerase	Prokaryotic type I DNA topoisomerase
53	d1cy8a__1	d1cy8a_	A380-A403,A281-A327,A365-A379	multi	Prokaryotic type I DNA topoisomerase	Prokaryotic type I DNA topoisomerase
54	d1cy8a__2	d1cy8a_	A215-A264,A458-A473	multi	Prokaryotic type I DNA topoisomerase	Prokaryotic type I DNA topoisomerase
54	d1cy8a__2	d1cy8a_	A404-A457,A265-A280	multi	Prokaryotic type I DNA topoisomerase	Prokaryotic type I DNA topoisomerase
55	d1d2oa1	d1d2oa1	A535-A624	all b	Prealbumin-like	Cna protein B-type domain (Pfam 05738)
55	d1d2oa1	d1d2oa2	A625-A721	all b	Prealbumin-like	Cna protein B-type domain (Pfam 05738)
56	d1d4va1	d1d4va2	A105-A144	small	TNF receptor-like	TNF receptor-like
56	d1d4va1	d1d4va3	A145-A185	small	TNF receptor-like	TNF receptor-like
57	d1d5ya1	d1d5ya1	A3-A56	all a	DNA/RNA-binding 3-helical bundle	Homeodomain-like
57	d1d5ya1	d1d5ya2	A57-A121	all a	DNA/RNA-binding 3-helical bundle	Homeodomain-like
58	d1d8ha_	d1d8ha_	A299-A413	a+b	mRNA triphosphatase CET1	mRNA triphosphatase CET1
58	d1d8ha_	d1d8ha_	A425-A500	a+b	mRNA triphosphatase CET1	mRNA triphosphatase CET1
59	d1ddza1	d1ddza1	A84-A310	a/b	Resolvase-like	beta-carbonic anhydrase, cab
59	d1ddza1	d1ddza2	A338-A564	a/b	Resolvase-like	beta-carbonic anhydrase, cab
60	d1df9c_	d1df9c_	C501-C538	small	Knottins (small inhibitors, toxins, lectins)	Bowman-Birk inhibitor, BBI
60	d1df9c_	d1df9c_	C539-C572	small	Knottins (small inhibitors, toxins, lectins)	Bowman-Birk inhibitor, BBI
61	d1dfca1	d1dfca1	A1013-A1137	all b	beta-Trefoil	Actin-crosslinking proteins
61	d1dfca1	d1dfca2	A1141-A1259	all b	beta-Trefoil	Actin-crosslinking proteins
62	d1dgsa1	d1dgsa1	A427-A501	all a	SAM domain-like	RuvA domain 2-like
62	d1dgsa1	d1dgsa1	A502-A576	all a	SAM domain-like	RuvA domain 2-like
63	d1dkrb1	d1dkrb1	B1-B164	a/b	PRTase-like	PRTase-like
63	d1dkrb1	d1dkrb2	B165-B315	a/b	PRTase-like	PRTase-like
64	d1dlpa1	d1dlpa1	A1-A120	all b	beta-Prism II	alpha-D-mannose-specific plant lectins
64	d1dlpa1	d1dlpa2	A121-A235	all b	beta-Prism II	alpha-D-mannose-specific plant lectins
65	d1dmr_2	d1dmr_2	A377-A500,A85-A145	a/b	Formate dehydrogenase/DMSO reductase, domains 1-3	Formate dehydrogenase/DMSO reductase, domains 1-3
65	d1dmr_2	d1dmr_2	A146-A258,A259-A376	a/b	Formate dehydrogenase/DMSO reductase, domains 1-3	Formate dehydrogenase/DMSO reductase, domains 1-3
66	d1doza_	d1doza_	A2-A170	a/b	Chelatase-like	Chelatase
66	d1doza_	d1doza_	A171-A310	a/b	Chelatase-like	Chelatase
67	d1e0ca1	d1e0ca1	A1-A135	a/b	Rhodanese/Cell cycle control phosphatase	Rhodanese/Cell cycle control phosphatase
67	d1e0ca1	d1e0ca2	A136-A271	a/b	Rhodanese/Cell cycle control phosphatase	Rhodanese/Cell cycle control phosphatase
68	d1e3pa3	d1e3pa3	A3-A151	a+b	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
68	d1e3pa3	d1e3pa4	A346-A482	a+b	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
69	d1e3pa6	d1e3pa6	A152-A262	a+b	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2-like
69	d1e3pa6	d1e3pa7	A483-A578	a+b	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2-like
70	d1e9hb1	d1e9hb1	B175-B309	all a	Cyclin-like	Cyclin-like
70	d1e9hb1	d1e9hb2	B310-B432	all a	Cyclin-like	Cyclin-like
71	d1eb7a1	d1eb7a1	A27-A168	all a	Cytochrome c	Cytochrome c
71	d1eb7a1	d1eb7a2	A181-A304	all a	Cytochrome c	Cytochrome c
72	d1efdn_	d1efdn_	N32-N159	a/b	Chelatase-like	"Helical backbone" metal receptor
72	d1efdn_	d1efdn_	N160-N293	a/b	Chelatase-like	"Helical backbone" metal receptor
73	d1efud4	d1efub4	B55-B139	a+b	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain
73	d1efud4	d1efub2	B140-B282	a+b	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain
74	d1ei5a1	d1ei5a1	A336-A418	all b	Streptavidin-like	D-aminopeptidase, middle and C-terminal domains
74	d1ei5a1	d1ei5a2	A419-A520	all b	Streptavidin-like	D-aminopeptidase, middle and C-terminal domains
75	d1emn_1	d1emn_1	A2124-A2164	small	Knottins (small inhibitors, toxins, lectins)	EGF/Laminin
75	d1emn_1	d1emn_2	A2165-A2205	small	Knottins (small inhibitors, toxins, lectins)	EGF/Laminin
76	d1erza_	d1erza_	A1-A162	a+b	Carbon-nitrogen hydrolase	Carbon-nitrogen hydrolase
76	d1erza_	d1erza_	A163-A274	a+b	Carbon-nitrogen hydrolase	Carbon-nitrogen hydrolase
77	d1exja2	d1exja2	A121-A200	a+b	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain
77	d1exja2	d1exja2	A201-A277	a+b	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain
78	d1f0ia1	d1f0ia1	A6-A254	a+b	Phospholipase D/nuclease	Phospholipase D/nuclease
78	d1f0ia1	d1f0ia2	A255-A514	a+b	Phospholipase D/nuclease	Phospholipase D/nuclease
79	d1f34b_	d1f34b_	B1-B74	a+b	Pepsin inhibitor-3	Pepsin inhibitor-3
79	d1f34b_	d1f34b_	B75-B148	a+b	Pepsin inhibitor-3	Pepsin inhibitor-3
80	d1f52a2	d1f52a2	A102-A257	a+b	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase
80	d1f52a2	d1f52a2	A258-A389	a+b	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase
81	d1f53a_	d1f53a_	A1-A47	all b	gamma-Crystallin-like	gamma-Crystallin-like
81	d1f53a_	d1f53a_	A48-A84	all b	gamma-Crystallin-like	gamma-Crystallin-like
82	d1f9za_	d1f9za_	A1-A65	a+b	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
82	d1f9za_	d1f9za_	A66-A126	a+b
83	d1feca1	d1feca1	A1-A186	a/b	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain
83	d1feca1	d1feca2	A187-A357	a/b	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain
84	d1fga___1	d1fga__	A20-A58	all b	beta-Trefoil	Cytokine
84	d1fga___1	d1fga__	A59-A101	all b	beta-Trefoil	Cytokine
85	d1fga___2	d1fga__	A59-A101	all b	beta-Trefoil	Cytokine
85	d1fga___2	d1fga__	A102-A143	all b	beta-Trefoil	Cytokine
86	d1fga___3	d1fga__	A20-A58	all b	beta-Trefoil	Cytokine
86	d1fga___3	d1fga__	A102-A143	all b	beta-Trefoil	Cytokine
87	d1fjra_	d1fjra_	A1-A62	all b	Methuselah ectodomain	Methuselah ectodomain
87	d1fjra_	d1fjra_	A121-A188	all b	Methuselah ectodomain	Methuselah ectodomain
88	d1fo4a5_1	d1jrob2	B176-B261	a+b	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain
88	d1fo4a5_1	d1jrob2	B461-B612	a+b	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain
89	d1fo4a5_2	d1jrob2	B262-B380	a+b	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain
89	d1fo4a5_2	d1jrob2	B613-B761	a+b	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain
90	d1foka1_1	d1foka1	A4-A143	all a	DNA/RNA-binding 3-helical bundle	"Winged helix" DNA-binding domain
90	d1foka1_1	d1foka2	A144-A281	all a	DNA/RNA-binding 3-helical bundle	"Winged helix" DNA-binding domain
91	d1foka1_2	d1foka2	A144-A281	all a	DNA/RNA-binding 3-helical bundle	"Winged helix" DNA-binding domain
91	d1foka1_2	d1foka3	A287-A386	all a	DNA/RNA-binding 3-helical bundle	"Winged helix" DNA-binding domain
92	d1foka1_3	d1foka1	A4-A143	all a	DNA/RNA-binding 3-helical bundle	"Winged helix" DNA-binding domain
92	d1foka1_3	d1foka3	A287-A386	all a	DNA/RNA-binding 3-helical bundle	"Winged helix" DNA-binding domain
93	d1ftra1	d1ftra1	A1-A124	a+b	Ferredoxin-like	Formylmethanofuran:tetrahydromethanopterin formyltransferase
93	d1ftra1	d1ftra2	A144-A296	a+b	Ferredoxin-like
94	d1fwqa_	d1hxrb_	B9-B77,B117-B123	all b	Mss4-like	Mss4-like
94	d1fwqa_	d1hxrb_	B88-B116,B78-B87	all b	Mss4-like	Mss4-like
95	d1fx8a_	d1fx8a_	A6-A136	membrane	Aquaporin-like	Aquaporin-like
95	d1fx8a_	d1fx8a_	A137-A259	membrane	Aquaporin-like	Aquaporin-like
96	d1fyze_	d1fyze_	E3-E79	all a	Open three-helical up-and-down bundle	Methane monooxygenase hydrolase, gamma subunit
96	d1fyze_	d1fyze_	E80-E169	all a	Open three-helical up-and-down bundle	Methane monooxygenase hydrolase, gamma subunit
97	d1g1ba_	d1g1ba_	A1-A99	a+b	Chorismate lyase	Chorismate lyase
97	d1g1ba_	d1g1ba_	A100-A164	a+b	Chorismate lyase	Chorismate lyase
98	d1g4ma1	d1g4ma1	A5-A175	all b	Immunoglobulin-like beta-sandwich	E set domains
98	d1g4ma1	d1g4ma2	A176-A357	all b	Immunoglobulin-like beta-sandwich	E set domains
99	d1g61a__1	d1g61a_	A2003-A2046	a+b	Pentein, beta/alpha-propeller	Pentein
99	d1g61a__1	d1g61a_	A2047-A2089	a+b	Pentein, beta/alpha-propeller	Pentein
100	d1g61a__2	d1g61a_	A2090-A2136	a+b	Pentein, beta/alpha-propeller	Pentein
100	d1g61a__2	d1g61a_	A2137-A2180	a+b	Pentein, beta/alpha-propeller	Pentein
101	d1ggua2	d1ggua2	A516-A629	all b	Immunoglobulin-like beta-sandwich	Transglutaminase, two C-terminal domains
101	d1ggua2	d1ggua3	A630-A726	all b	Immunoglobulin-like beta-sandwich	Transglutaminase, two C-terminal domains
102	d1guwa_	d1guwa_	A19-A80	all b	SH3-like barrel	Chromo domain-like
102	d1guwa_	d1dz1a_	A115-A171	all b	SH3-like barrel	Chromo domain-like
103	d1h16a_	d1h16a_	A164-A425	a/b	PFL-like glycyl radical enzymes	PFL-like glycyl radical enzymes
103	d1h16a_	d1h16a_	A426-A742	a/b	PFL-like glycyl radical enzymes	PFL-like glycyl radical enzymes
104	d1h5yb_	d1h5yb_	B1-B126	a/b	TIM beta/alpha-barrel	Ribulose-phoshate binding barrel
104	d1h5yb_	d1h5yb_	B127-B253	a/b	TIM beta/alpha-barrel	Ribulose-phoshate binding barrel
105	d1h6ga1	d1h6ga1	A377-A507	all a	Four-helical up-and-down bundle	alpha-catenin/vinculin
105	d1h6ga1	d1h6ga2	A508-A631	all a	Four-helical up-and-down bundle	alpha-catenin/vinculin
106	d1h6kc1	d1n52a1	A26-A142	all a	alpha-alpha superhelix	ARM repeat
106	d1h6kc1	d1n52a3	A481-A616	all a	alpha-alpha superhelix	ARM repeat
107	d1h99a1	d1h99a1	A54-A168	all a	PTS-regulatory domain, PRD	PTS-regulatory domain, PRD
107	d1h99a1	d1h99a2	A169-A275	all a	PTS-regulatory domain, PRD	PTS-regulatory domain, PRD
108	d1h9ma1	d1h9ma1	A1-A72	all b	OB-fold	MOP-like
108	d1h9ma1	d1h9ma2	A73-A141	all b	OB-fold	MOP-like
109	d1hazb_	d1hazb_	B16-B123	all b	Trypsin-like serine proteases	Trypsin-like serine proteases
109	d1hazb_	d1hazb_	B124-B245	all b	Trypsin-like serine proteases	Trypsin-like serine proteases
110	d1hg7a_	d1hg7a_	A1000-A1037	all b	beta-clip	AFP III-like domain (Pfam 01354)
110	d1hg7a_	d1hg7a_	A1038-A1065	all b	beta-clip	AFP III-like domain (Pfam 01354)
111	d1hh2p2	d1hh2p2	P199-P278	a+b	Alpha-lytic protease prodomain-like	Prokaryotic type KH domain (KH-domain type II)
111	d1hh2p2	d1hh2p3	P279-P344	a+b	Alpha-lytic protease prodomain-like	Prokaryotic type KH domain (KH-domain type II)
112	d1hr6a1	d1hr6a1	A14-A234	a+b	LuxS/MPP-like metallohydrolase	LuxS/MPP-like metallohydrolase
112	d1hr6a1	d1hr6a2	A235-A470	a+b	LuxS/MPP-like metallohydrolase	LuxS/MPP-like metallohydrolase
113	d1hs6a2	d1hs6a2	A1-A113	all b	Leukotriene A4 hydrolase N-terminal domain	Leukotriene A4 hydrolase N-terminal domain
113	d1hs6a2	d1hs6a2	A114-A208	all b	Leukotriene A4 hydrolase N-terminal domain	Leukotriene A4 hydrolase N-terminal domain
114	d1hsla_	d1hsla_	A1-A103	a/b	Periplasmic binding protein-like II	Periplasmic binding protein-like II
114	d1hsla_	d1hsla_	A104-A238	a/b	Periplasmic binding protein-like II	Periplasmic binding protein-like II
115	d1hxpa1	d1hxpa1	A44-A177	a+b	HIT-like	HIT-like
115	d1hxpa1	d1hxpa2	A178-A348	a+b	HIT-like	HIT-like
116	d1i1qa__1	d1i1qa_	A5-A57,A178-A224	a+b	ADC synthase	ADC synthase
116	d1i1qa__1	d1i1qa_	A99-A177,A58-A98	a+b	ADC synthase	ADC synthase
117	d1i1qa__2	d1i1qa_	A99-A177,A58-A98	a+b	ADC synthase	ADC synthase
117	d1i1qa__2	d1i1qa_	A258-A310,A466-A516	a+b	ADC synthase	ADC synthase
118	d1i1qa__3	d1i1qa_	A258-A310,A466-A516	a+b	ADC synthase	ADC synthase
118	d1i1qa__3	d1i1qa_	A387-A465,A311-A386	a+b	ADC synthase	ADC synthase
119	d1i1qa__4	d1i1qa_	A5-A57,A178-A224	a+b	ADC synthase	ADC synthase
119	d1i1qa__4	d1i1qa_	A387-A465,A311-A386	a+b	ADC synthase	ADC synthase
120	d1i31a_	d1i31a_	A159-A285,A393-A435	all b	Common fold of diphtheria toxin/transcription factors/cytochrome f	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
120	d1i31a_	d1i31a_	A286-A376,A377-A392	all b		Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
121	d1i50h_	d1i50h_	H2-H63	all b	OB-fold	Nucleic acid-binding proteins
121	d1i50h_	d1i50h_	H76-H146	all b	OB-fold	Nucleic acid-binding proteins
122	d1i7oa1	d1i7oa1	A1-A218	a+b	FAH	FAH
122	d1i7oa1	d1i7oa2	A219-A429	a+b	FAH	FAH
123	d1i8da1	d1i8da1	A1-A93	all b	Reductase/isomerase/elongation factor common domain	Riboflavin synthase domain-like
123	d1i8da1	d1i8da2	A94-A206	all b	Reductase/isomerase/elongation factor common domain	Riboflavin synthase domain-like
124	d1idua_	d1idua_	A3-A239	all a	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase
124	d1idua_	d1idua_	A240-A578	all a	Acid phosphatase/Vanadium-dependent haloperoxidase	Acid phosphatase/Vanadium-dependent haloperoxidase
125	d1iica1	d1iica1	A34-A226	a+b	Acyl-CoA N-acyltransferases (Nat)	Acyl-CoA N-acyltransferases (Nat)
125	d1iica1	d1iica2	A227-A455	a+b	Acyl-CoA N-acyltransferases (Nat)	Acyl-CoA N-acyltransferases (Nat)
126	d1in0b1	d1in0a2	A101-A163,A2-A9	a+b	Ferredoxin-like	YajQ-like
126	d1in0b1	d1in0a1	A10-A89,A90-A100	a+b	Ferredoxin-like	YajQ-like
127	d1is2a1	d1is2a1	A272-A442	all a	Bromodomain-like	Acyl-CoA dehydrogenase C-terminal domain-like
127	d1is2a1	d1is2a2	A475-A603	all a	Bromodomain-like	Acyl-CoA dehydrogenase C-terminal domain-like
128	d1isva1_1	d1isva1	A304-A353	all b	beta-Trefoil	Ricin B-like lectins
128	d1isva1_1	d1isva1	A354-A395	all b	beta-Trefoil	Ricin B-like lectins
129	d1isva1_2	d1isva1	A354-A395	all b	beta-Trefoil	Ricin B-like lectins
129	d1isva1_2	d1isva1	A396-A436	all b	beta-Trefoil	Ricin B-like lectins
130	d1isva1_3	d1isva1	A304-A353	all b	beta-Trefoil	Ricin B-like lectins
130	d1isva1_3	d1isva1	A396-A436	all b	beta-Trefoil	Ricin B-like lectins
131	d1itbb1	d1itbb1	B6-B101	all b	Immunoglobulin-like beta-sandwich	Immunoglobulin
131	d1itbb1	d1itbb2	B102-B204	all b	Immunoglobulin-like beta-sandwich	Immunoglobulin
132	d1itkb1	d1itkb1	B60-B433	all a	Heme-dependent peroxidases	Heme-dependent peroxidases
132	d1itkb1	d1itkb2	B445-B731	all a	Heme-dependent peroxidases	Heme-dependent peroxidases
133	d1iwga1	d1iwga1	A38-A134	a+b	Ferredoxin-like	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
133	d1iwga1	d1iwga3	A567-A673	a+b	Ferredoxin-like
134	d1iwga5	d1iwga5	A182-A273	a+b	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains	Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
134	d1iwga5	d1iwga6	A725-A812	a+b
135	d1iwga7	d1iwga7	A7-A37,A331-A498	membrane	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain
135	d1iwga7	d1iwga8	A513-A566,A869-A1036	membrane	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain
136	d1j6za1	d1j6za1	A4-A146	a/b	Ribonuclease H-like motif	Actin-like ATPase domain
136	d1j6za1	d1j6za2	A147-A372	a/b	Ribonuclease H-like motif	Actin-like ATPase domain
137	d1j7na1	d1j7na1	A42-A251	a+b	Zincin-like	Metalloproteases ("zincins"), catalytic domain
137	d1j7na1	d1j7na2	A581-A773	a+b	Zincin-like	Metalloproteases ("zincins"), catalytic domain
138	d1jaw_2	d1jaw_2	A177-A281	a+b	Creatinase/aminopeptidase	Creatinase/aminopeptidase
138	d1jaw_2	d1jaw_2	A282-A440	a+b	Creatinase/aminopeptidase	Creatinase/aminopeptidase
139	d1jfla1	d1jfla1	A1-A115	a/b	ATC-like	Aspartate/glutamate racemase
139	d1jfla1	d1jfla2	A116-A228	a/b	ATC-like	Aspartate/glutamate racemase
140	d1jh7a_	d1jh7a_	A1-A85	a+b	LigT-like	LigT-like
140	d1jh7a_	d1jh7a_	A86-A183	a+b	LigT-like	LigT-like
141	d1jlya1_1	d1jlya1	A1-A53	all b	beta-Trefoil	Agglutinin
141	d1jlya1_1	d1jlya1	A54-A106	all b	beta-Trefoil	Agglutinin
142	d1jlya1_2	d1jlya1	A54-A106	all b	beta-Trefoil	Agglutinin
142	d1jlya1_2	d1jlya1	A107-A153	all b	beta-Trefoil	Agglutinin
143	d1jlya1_3	d1jlya1	A1-A53	all b	beta-Trefoil	Agglutinin
143	d1jlya1_3	d1jlya1	A107-A153	all b	beta-Trefoil	Agglutinin
144	d1jnxx1	d1jnxx1	X1649-X1757	a/b	BRCT domain	BRCT domain
144	d1jnxx1	d1jnxx2	X1758-X1859	a/b	BRCT domain	BRCT domain
145	d1jr2a_	d1jr2a_	A1-A136	a/b	Uroporphyrinogen III synthase (U3S, HemD)	Uroporphyrinogen III synthase (U3S, HemD)
145	d1jr2a_	d1jr2a_	A137-A260	a/b	Uroporphyrinogen III synthase (U3S, HemD)	Uroporphyrinogen III synthase (U3S, HemD)
146	d1jsg__	d1jsg__	A4-A57	all b	Oncogene products	Oncogene products
146	d1jsg__	d1jsg__	A58-A114	all b	Oncogene products	Oncogene products
147	d1jtgb_	d1jtgb_	B1-B79	a+b	beta-lactamase-inhibitor protein, BLIP	beta-lactamase-inhibitor protein, BLIP
147	d1jtgb_	d1jtgb_	B80-B165	a+b	beta-lactamase-inhibitor protein, BLIP	beta-lactamase-inhibitor protein, BLIP
148	d1k28d1	d1k28d1	D32-D111	all b	Phage tail proteins	Phage tail proteins
148	d1k28d1	d1k28d2	D227-D359	all b	Phage tail proteins	Phage tail proteins
149	d1k2yx1_1	d1k2yx1	X5-X152	a/b	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains
149	d1k2yx1_1	d1k2yx2	X153-X258	a/b	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains
150	d1k2yx1_2	d1k2yx2	X153-X258	a/b	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains
150	d1k2yx1_2	d1k2yx3	X259-X367	a/b	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains
151	d1k2yx1_3	d1k2yx1	X5-X152	a/b	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains
151	d1k2yx1_3	d1k2yx3	X259-X367	a/b	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains
152	d1k6ka_	d1k6ka_	A1-A73	all a	Double Clp-N motif	Double Clp-N motif
152	d1k6ka_	d1k6ka_	A74-A142	all a	Double Clp-N motif	Double Clp-N motif
153	d1k8kd1	d1k8kd1	D13-D122	a+b	Secretion chaperone-like	Arp2/3 complex subunits
153	d1k8kd1	d1k8kd2	D123-D253	a+b	Secretion chaperone-like	Arp2/3 complex subunits
154	d1kapp1	d1kapp1	P253-P333	all b	Single-stranded right-handed beta-helix	beta-Roll
154	d1kapp1	d1kapp1	P370-P470	all b	Single-stranded right-handed beta-helix	beta-Roll
155	d1kg1a_	d1kg1a_	A1-A27	small	Necrosis inducing protein 1, NIP1	Necrosis inducing protein 1, NIP1
155	d1kg1a_	d1kg1a_	A28-A60	small	Necrosis inducing protein 1, NIP1	Necrosis inducing protein 1, NIP1
156	d1kiza_	d1kizb_	B55-B169	all a	Terpenoid synthases	Terpenoid synthases
156	d1kiza_	d1kizb_	B170-B307	all a	Terpenoid synthases	Terpenoid synthases
157	d1knca_	d1knca_	A22-A92	all a	AhpD-like	AhpD-like
157	d1knca_	d1knca_	A104-A175	all a	AhpD-like	AhpD-like
158	d1kplb_	d1kplb_	B12-B240	membrane	Clc chloride channel	Clc chloride channel
158	d1kplb_	d1kplb_	B241-B462	membrane	Clc chloride channel	Clc chloride channel
159	d1kt1a2	d1kt1a2	A28-A138	a+b	FKBP-like	FKBP-like
159	d1kt1a2	d1kt1a3	A139-A253	a+b	FKBP-like	FKBP-like
160	d1ky9b1	d1ky9b1	B268-B349	all b	PDZ domain-like	PDZ domain-like
160	d1ky9b1	d1ky9b2	B375-B446	all b	PDZ domain-like	PDZ domain-like
161	d1kzqa1	d1kzqa1	A3-A130	all b	Cupredoxin-like	Major surface antigen p30, SAG1
161	d1kzqa1	d1kzqa2	A137-A255	all b	Cupredoxin-like	Major surface antigen p30, SAG1
162	d1lara1	d1lara1	A1307-A1623	a/b	(Phosphotyrosine protein) phosphatases II	(Phosphotyrosine protein) phosphatases II
162	d1lara1	d1lara2	A1628-A1876	a/b	(Phosphotyrosine protein) phosphatases II	(Phosphotyrosine protein) phosphatases II
163	d1li1a1	d1li1a1	A5-A114	a+b	C-type lectin-like	C-type lectin-like
163	d1li1a1	d1li1a2	A115-A228	a+b	C-type lectin-like	C-type lectin-like
164	d1lpba1	d1lpba1	A6-A42	small	Knottins (small inhibitors, toxins, lectins)	Colipase-like
164	d1lpba1	d1lpba2	A43-A90	small	Knottins (small inhibitors, toxins, lectins)	Colipase-like
165	d1m98a1	d1m98a1	A2-A90	all a	Orange carotenoid protein, N-terminal domain	Orange carotenoid protein, N-terminal domain
165	d1m98a1	d1m98a1	A91-A175	all a	Orange carotenoid protein, N-terminal domain	Orange carotenoid protein, N-terminal domain
166	d1m9na2	d1m9na2	A201-A394	a/b	Cytidine deaminase-like	AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
166	d1m9na2	d1m9na2	A395-A592	a/b	Cytidine deaminase-like
167	d1m9sa2	d1m9sa2	A391-A465	all b	SH3-like barrel	GW domain
167	d1m9sa2	d1m9sa3	A466-A551	all b	SH3-like barrel	GW domain
168	d1moq__	d1moq__	A243-A430	a/b	SIS domain	SIS domain
168	d1moq__	d1moq__	A431-A608	a/b	SIS domain	SIS domain
169	d1msva_	d1msva_	A4-A166	a+b	S-adenosylmethionine decarboxylase	S-adenosylmethionine decarboxylase
169	d1msva_	d1msva_	A167-A328	a+b	S-adenosylmethionine decarboxylase	S-adenosylmethionine decarboxylase
170	d1n0fg_	d1n0fa_	A22-A101	all b	AbrB/MazE/MraZ-like	AbrB/MazE/MraZ-like
170	d1n0fg_	d1n0fa_	A102-A162	all b	AbrB/MazE/MraZ-like	AbrB/MazE/MraZ-like
171	d1n2ma_	d1n2ma_	A7-A84,A152-A165	a+b	Pyruvoyl-dependent histidine and arginine decarboxylases	Pyruvoyl-dependent histidine and arginine decarboxylases
171	d1n2ma_	d1n2ma_	A101-A151,A85-A100	a+b	Pyruvoyl-dependent histidine and arginine decarboxylases	Pyruvoyl-dependent histidine and arginine decarboxylases
172	d1n81a_	d1n81a_	A21-A113	all a	Gametocyte protein Pfg27	Gametocyte protein Pfg27
172	d1n81a_	d1n81a_	A114-A206	all a	Gametocyte protein Pfg27	Gametocyte protein Pfg27
173	d1nol_2	d1nol_2	A154-A250	all a	Di-copper centre-containing domain	Di-copper centre-containing domain
173	d1nol_2	d1nol_2	A251-A379	all a	Di-copper centre-containing domain	Di-copper centre-containing domain
174	d1nu9c1	d1nu9c1	C1-C145	all a	immunoglobulin/albumin-binding domain-like	Staphylocoagulase
174	d1nu9c1	d1nu9c2	C146-C281	all a	immunoglobulin/albumin-binding domain-like	Staphylocoagulase
175	d1o70a1	d1o70a1	A328-A467	all b	FAS1 domain	FAS1 domain
175	d1o70a1	d1o70a2	A468-A623	all b	FAS1 domain	FAS1 domain
176	d1o9sa2	d1o9sa2	A194-A288	all b	beta-clip	SET domain
176	d1o9sa2	d1o9sa2	A289-A366	all b	beta-clip	SET domain
177	d1ocka_	d1ocka_	A53-A209	a/b	Amidase signature (AS) enzymes	Amidase signature (AS) enzymes
177	d1ocka_	d1ocka_	A218-A408	a/b	Amidase signature (AS) enzymes	Amidase signature (AS) enzymes
178	d1opma1	d1opma1	A45-A200	all b	Nucleoplasmin-like/VP (viral coat and capsid proteins)	PHM/PNGase F
178	d1opma1	d1opma2	A201-A354	all b	Nucleoplasmin-like/VP (viral coat and capsid proteins)	PHM/PNGase F
179	d1pg6a_	d1pg6a_	A5-A92	all b	Double-stranded beta-helix	TRAP-like
179	d1pg6a_	d1pg6a_	A93-A156	all b	Double-stranded beta-helix	TRAP-like
180	d1pgja1	d1pgja1	A179-A324	all a	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like
180	d1pgja1	d1pgja1	A325-A478	all a	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like
181	d1pprm1	d1pprm1	M1-M156	all a	Peridinin-chlorophyll protein	Peridinin-chlorophyll protein
181	d1pprm1	d1pprm2	M157-M312	all a	Peridinin-chlorophyll protein	Peridinin-chlorophyll protein
182	d1pv5a_	d1pv5a_	A145-A261,A1-A26	a+b	Hypothetical protein YwqG	Hypothetical protein YwqG
182	d1pv5a_	d1pv5a_	A27-A130,A131-A144	a+b	Hypothetical protein YwqG	Hypothetical protein YwqG
183	d1pv6a_	d1pw4a_	A5-A226	membrane	MFS general substrate transporter	MFS general substrate transporter
183	d1pv6a_	d1pw4a_	A240-A451	membrane	MFS general substrate transporter	MFS general substrate transporter
184	d1qd1b1	d1qd1b1	B2002-B2177	a+b	Ferredoxin-like	Formiminotransferase domain of formiminotransferase-cyclodeaminase.
184	d1qd1b1	d1qd1b2	B2178-B2326	a+b	Ferredoxin-like
185	d1qhga1	d1qhga1	A1-A84,A85-A108,A206-A318	a/b	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases
185	d1qhga1	d1qhga2	A319-A388,A556-A569,A570-A651	a/b	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases
186	d1qjsa1	d1qjsa1	A24-A218	all b	4-bladed beta-propeller	Hemopexin-like domain
186	d1qjsa1	d1qjsa2	A223-A435	all b	4-bladed beta-propeller	Hemopexin-like domain
187	d2bs2c1	d2bs2c1	C1-C103	membrane	Heme-binding four-helical bundle	Fumarate reductase respiratory complex transmembrane subunits
187	d2bs2c1	d2bs2c1	C104-C254	membrane	Heme-binding four-helical bundle
188	d1qm4a1	d1qm4a1	A17-A116	a+b	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase
188	d1qm4a1	d1qm4a2	A129-A252	a+b	S-adenosylmethionine synthetase	S-adenosylmethionine synthetase
189	d1qmea1	d1qmea1	A632-A692	a+b	Penicillin-binding protein 2x (pbp-2x), c-terminal domain	Penicillin-binding protein 2x (pbp-2x), c-terminal domain
189	d1qmea1	d1qmea2	A693-A750	a+b	Penicillin-binding protein 2x (pbp-2x), c-terminal domain	Penicillin-binding protein 2x (pbp-2x), c-terminal domain
190	d1qmha2_1	d1qmha2	A5-A85	a+b	IF3-like	EPT/RTPC-like
190	d1qmha2_1	d1qmha2	A86-A179	a+b	IF3-like	EPT/RTPC-like
191	d1qmha2_2	d1qmha2	A5-A85	a+b	IF3-like	EPT/RTPC-like
191	d1qmha2_2	d1qmha2	A180-A338	a+b	IF3-like	EPT/RTPC-like
192	d1qqga1	d1qqga1	A12-A114	all b	PH domain-like	PH domain-like
192	d1qqga1	d1qqga2	A159-A262	all b	PH domain-like	PH domain-like
193	d1qr0a1	d1qr0a1	A1-A101	a+b	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase
193	d1qr0a1	d1qr0a2	A102-A207	a+b	4'-phosphopantetheinyl transferase	4'-phosphopantetheinyl transferase
194	d1qs1a1	d1qs1a1	A60-A262	a+b	ADP-ribosylation	ADP-ribosylation
194	d1qs1a1	d1qs1a2	A263-A461	a+b	ADP-ribosylation	ADP-ribosylation
195	d1qtqa1	d1qtqa1	A339-A442	all b	Ribosomal protein L25-like	Ribosomal protein L25-like
195	d1qtqa1	d1qtqa1	A454-A547	all b	Ribosomal protein L25-like	Ribosomal protein L25-like
196	d1qunb1	d1qunb1	B1-B158	all b	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins
196	d1qunb1	d1qunb2	B159-B279	all b		Bacterial adhesins
197	d1r51a1	d1r51a1	A2-A137	a+b	T-fold	Tetrahydrobiopterin biosynthesis enzymes-like
197	d1r51a1	d1r51a2	A138-A295	a+b	T-fold	Tetrahydrobiopterin biosynthesis enzymes-like
198	d1r56e2	d1r51a1	A2-A136	a+b	T-fold	Tetrahydrobiopterin biosynthesis enzymes-like
198	d1r56e2	d1r51a2	A137-A295	a+b	T-fold	Tetrahydrobiopterin biosynthesis enzymes-like
199	d1rhza_	d1rhza_	A2-A204	membrane	Preprotein translocase SecY subunit	Preprotein translocase SecY subunit
199	d1rhza_	d1rhza_	A205-A433	membrane	Preprotein translocase SecY subunit	Preprotein translocase SecY subunit
200	d1rl6a1	d1rl6a1	A7-A77	a+b	Ribosomal protein L6	Ribosomal protein L6
200	d1rl6a1	d1rl6a2	A78-A170	a+b	Ribosomal protein L6	Ribosomal protein L6
201	d1rwtj_	d1rwta_	A14-A134	membrane	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein
201	d1rwtj_	d1rwta_	A135-A231	membrane	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein
202	d1s3na_	d1s3na_	A1-A81	a+b	Metallo-dependent phosphatases	Metallo-dependent phosphatases
202	d1s3na_	d1s3na_	A82-A141	a+b	Metallo-dependent phosphatases	Metallo-dependent phosphatases
203	d1skz_1	d1skz_1	A7-A60	small	Knottins (small inhibitors, toxins, lectins)	Leech antihemostatic proteins
203	d1skz_1	d1skz_2	A61-A110	small	Knottins (small inhibitors, toxins, lectins)	Leech antihemostatic proteins
204	d1squa_	d1squa_	A1-A39,A129-A152	a+b	CheC-like	CheC-like
204	d1squa_	d1squa_	A75-A128,A40-A74	a+b	CheC-like	CheC-like
205	d1sr9b3	d1sr9a3	A492-A521,A522-A546	a+b	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
205	d1sr9b3	d1sr9a3	A547-A577,A615-A643	a+b
206	d1sumb_	d1sumb_	B2-B113	all a	Spectrin repeat-like	PhoU-like (Pfam 01895)
206	d1sumb_	d1sumb_	B114-B225	all a	Spectrin repeat-like	PhoU-like (Pfam 01895)
207	d1t0ty_	d1t0tv_	V6-V133	a+b	Ferredoxin-like	Dimeric alpha+beta barrel
207	d1t0ty_	d1t0tv_	V134-V248	a+b	Ferredoxin-like	Dimeric alpha+beta barrel
208	d1t3ta3	d1t3ta3	A1-A69	a+b	PurS-like	PurS-like
208	d1t3ta3	d1t3ta3	A70-A152	a+b	PurS-like	PurS-like
209	d1tbrr1	d1tbrr1	R1-R55	small	Kazal-type serine protease inhibitors	Kazal-type serine protease inhibitors
209	d1tbrr1	d1tbrr2	R56-R103	small	Kazal-type serine protease inhibitors	Kazal-type serine protease inhibitors
210	d1tdj_2	d1tdj_2	A336-A423	a+b	Ferredoxin-like	ACT-like
210	d1tdj_2	d1tdj_3	A424-A514	a+b	Ferredoxin-like	ACT-like
211	d1tocr1	d1tocr1	R1-R59	small	BPTI-like	BPTI-like
211	d1tocr1	d1tocr2	R60-R119	small	BPTI-like	BPTI-like
212	d1ttua3	d1ttua3	A381-A439	all b	beta-Trefoil	DNA-binding protein LAG-1 (CSL)
212	d1ttua3	d1ttua3	A484-A541	all b	beta-Trefoil	DNA-binding protein LAG-1 (CSL)
213	d1utaa_	d1utaa_	A243-A256,A293-A319	a+b	Ferredoxin-like	Sporulation related repeat (SPOR, Pfam 05036)
213	d1utaa_	d1utaa_	A282-A292,A257-A281	a+b	Ferredoxin-like	Sporulation related repeat (SPOR, Pfam 05036)
214	d1v9ma_	d1v9ma_	A78-A178	membrane	V-type ATP synthase subunit C	V-type ATP synthase subunit C
214	d1v9ma_	d1v9ma_	A186-A280	membrane	V-type ATP synthase subunit C	V-type ATP synthase subunit C
215	d1vjla_	d1vjla_	A1-A67	a+b	Hypothetical protein TM0160	Hypothetical protein TM0160
215	d1vjla_	d1vjla_	A68-A150	a+b	Hypothetical protein TM0160	Hypothetical protein TM0160
216	d1vk6a1	d1vk6a1	A1-A125	a+b	Nudix	Nudix
216	d1vk6a1	d1vk6a2	A126-A256	a+b	Nudix	Nudix
217	d1vkwa_	d1vkwa_	A1-A113	a+b	FMN-dependent nitroreductase-like	FMN-dependent nitroreductase-like
217	d1vkwa_	d1vkwa_	A114-A206	a+b	FMN-dependent nitroreductase-like	FMN-dependent nitroreductase-like
218	d1vl4b_	d1vl4a_	A2-A86	a+b	Putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)	Putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)
218	d1vl4b_	d1vl4a_	A91-A214	a+b	Putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)	Putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523)
219	d1vlba4	d1vlba4	A350-A608	a+b	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain
219	d1vlba4	d1vlba4	A609-A907	a+b	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain
220	d1vlya2	d1vlya2	A115-A197	a+b	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
220	d1vlya2	d1vlya2	A26-A114	a+b	Aminomethyltransferase folate-binding domain	Aminomethyltransferase folate-binding domain
221	d1vmoa__1	d1vmoa_	A1-A28,A134-A163	all b	beta-Prism I	Vitelline membrane outer protein-I (VMO-I)
221	d1vmoa__1	d1vmoa_	A59-A81,A29-A58	all b	beta-Prism I	Vitelline membrane outer protein-I (VMO-I)
222	d1vmoa__2	d1vmoa_	A29-A81	all b	beta-Prism I	Vitelline membrane outer protein-I (VMO-I)
222	d1vmoa__2	d1vmoa_	A82-A133	all b	beta-Prism I	Vitelline membrane outer protein-I (VMO-I)
223	d1vmoa__3	d1vmoa_	A1-A28,A134-A163	all b	beta-Prism I	Vitelline membrane outer protein-I (VMO-I)
223	d1vmoa__3	d1vmoa_	A112-A133,A82-A111	all b	beta-Prism I	Vitelline membrane outer protein-I (VMO-I)
224	d1wba___1	d1wba__	A2-A66	all b	beta-Trefoil	STI-like
224	d1wba___1	d1wba__	A67-A126	all b	beta-Trefoil	STI-like
225	d1wba___2	d1wba__	A67-A126	all b	beta-Trefoil	STI-like
225	d1wba___2	d1wba__	A127-A172	all b	beta-Trefoil	STI-like
226	d1wba___3	d1wba__	A2-A66	all b	beta-Trefoil	STI-like
226	d1wba___3	d1wba__	A127-A172	all b	beta-Trefoil	STI-like
227	d1ycqa_	d1ycqa_	A21-A65	all a	SWIB/MDM2 domain	SWIB/MDM2 domain
227	d1ycqa_	d1ycqa_	A66-A108	all a	SWIB/MDM2 domain	SWIB/MDM2 domain
228	d1yua_1	d1yua_1	A1-A63	small	Rubredoxin-like	Zinc beta-ribbon
228	d1yua_1	d1yua_2	A64-A122	small	Rubredoxin-like	Zinc beta-ribbon
229	d2bmia_	d2bmia_	A4-A116	a+b	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase
229	d2bmia_	d2bmia_	A117-A231	a+b	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase
230	d2bn2a_	d2bn2a_	A1-A51	all b	Neurophysin II	Neurophysin II
230	d2bn2a_	d2bn2a_	A52-A85	all b	Neurophysin II	Neurophysin II
231	d2dri__	d2dri__	A1-A122	a/b	Periplasmic binding protein-like I	Periplasmic binding protein-like I
231	d2dri__	d2dri__	A123-A271	a/b	Periplasmic binding protein-like I	Periplasmic binding protein-like I
232	d2g3pa1	d2g3pa1	A2-A105	all b	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p
232	d2g3pa1	d2g3pa2	A106-A219	all b	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p
233	d2gep_3	d2gep_3	A146-A345	a+b	Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
233	d2gep_3	d2gep_4	A426-A570	a+b	Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	Sulfite reductase hemoprotein (SiRHP), domains 2 and 4
234	d2pspa1	d2pspa1	A2-A54	small	Trefoil/Plexin domain-like	Trefoil
234	d2pspa1	d2pspa2	A55-A106	small	Trefoil/Plexin domain-like	Trefoil
235	d2up1a1	d2up1a1	A8-A103	a+b	Ferredoxin-like	RNA-binding domain, RBD
235	d2up1a1	d2up1a2	A104-A190	a+b	Ferredoxin-like	RNA-binding domain, RBD
236	d3ezma_	d3ezma_	A1-A50	all b	Cyanovirin-N	Cyanovirin-N
236	d3ezma_	d3ezma_	A51-A101	all b	Cyanovirin-N	Cyanovirin-N
237	d3pep__	d3pep__	A1-A170	all b	Acid proteases	Acid proteases
237	d3pep__	d3pep__	A171-A326	all b	Acid proteases	Acid proteases
238	d4csma_	d4csma_	A150-A243,A1-A25	all a	Chorismate mutase II	Chorismate mutase II
238	d4csma_	d4csma_	A26-A130,A131-A149	all a	Chorismate mutase II	Chorismate mutase II
239	d4proc1	d4proc1	C6-C86	a+b	Alpha-lytic protease prodomain-like	Alpha-lytic protease prodomain
239	d4proc1	d4proc2	C87-C166	a+b	Alpha-lytic protease prodomain-like	Alpha-lytic protease prodomain
240	d7acn_2	d7acn_2	A62-A192	a/b	Aconitase iron-sulfur domain	Aconitase iron-sulfur domain
240	d7acn_2	d7acn_2	A346-A475	a/b	Aconitase iron-sulfur domain	Aconitase iron-sulfur domain
241	d8gep_1	d8gep_1	A81-A145	a+b	Ferredoxin-like	Sulfite reductase, domains 1 and 3
241	d8gep_1	d8gep_2	A346-A425	a+b	Ferredoxin-like	Sulfite reductase, domains 1 and 3

MALIDUP: Manual ALIgnments of DUPlicated domains

INTRODUCTION

EXAMPLE

TABLE OF CONTENTS