d1c8vb_

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1c8v_B1d1c8vb_B83-B194Alpha and beta proteins (a/b)Tryptophan synthase beta subunit-like PLP-dependent enzymesTryptophan synthase beta subunit-like PLP-dependent enzymesTryptophan synthase beta subunit-like PLP-dependent enzymesTryptophan synthase, beta-subunit
1c8v_B2d1c8vb_B195-B389Alpha and beta proteins (a/b)Tryptophan synthase beta subunit-like PLP-dependent enzymesTryptophan synthase beta subunit-like PLP-dependent enzymesTryptophan synthase beta subunit-like PLP-dependent enzymesTryptophan synthase, beta-subunit

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual930.107533.0420959.13978-11.05703
dali1030.087382.9628456.79612-9.06031
tm1090.055053.2866256.42202-11.08853
fast900.088893.1162658.61111-6.44806

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1c8v_B1   ------ggAHKTNQVLGQALLAKRMG---KSEIIAETGAGQHGVASALASALLG-LKCRIYMGakdverq---------------------------------------------SPNVFRMRLMG-AEVIPVHsgs-------------atlKDACNEALRDWSGSy-------eTAHYMLGTAAgp-------
1c8v_B2   hpyptivrEFQRMIGEETKAQILDKEgrlPDAVIACVGGGSNAIGMFADFINDTsVGLIGVEPgghgietgehgaplkhgrvgiyfgmkapmmqtadgqieesysisagldfpsvGPQHAYLNSIGrADYVSITddealeafktlcrhegiipALESSHALAHALKMmreqpekeqLLVVNLSGRGdkdiftvhd

DALI alignment      superposition in PDB format     colored superposition in PyMol

1c8v_B1   ------GGAHKTNQVLGQALLAKR---MGKSEIIAETGAGQHGVASALASALLG-LKCRIYMGA--------KDVE-----------------------------------RQSPNvFRMRLM----GAEVIPVHSG-------------satlKDACNEALRDWSGS-------yETAHYMLGTA-------agp
1c8v_B2   hpyptiVREFQRMIGEETKAQILDkegRLPDAVIACVGGGSNAIGMFADFINDTsVGLIGVEPGghgietgeHGAPlkhgrvgiyfgmkapmmqtadgqieesysisagldFPSVG-PQHAYLnsigRADYVSITDDealeafktlcrhegiipALESSHALAHALKMmreqpekeQLLVVNLSGRgdkdiftvhd

TM alignment      superposition in PDB format     colored superposition in PyMol

1c8v_B1   ----GGA--HKTNQVLGQALLAKR-M-GKSEIIAET-GAGQHGVASALASALLG-LKCRIYMGA--------KDVE------------------------------------RQSPN-VFRMR-LMGAEVIPVHSGS-A----------------TLKDACNEALRDWSG---S-YETAHYMLGTAAG---------P
1c8v_B2   HPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSI-TDDEALEAFKTLCRHEGIIPALESSHALAHALKM-MREQPEKEQLLVVNLSGRGDKDIFTVHD-

FAST alignment      superposition in PDB format     colored superposition in PyMol

1c8v_B1   GGA---------HKTNQVLGQALLAKRMG----KSEIIAETGAGQHGVASALASALL-GLKCRIYMGA-------------------------------------------KDVERQSPNV-----FRMRLMG-----AEVIPVHSGSATLK-------------------DACNEALRDWSGSYE---------TAHYMLGTAAGP----------
1c8v_B2   ---HPYPTIVREFQRMIGEETKAQILDK-EGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLD------FPSVGPQHAYL-NSIGRADYVSITD------DEALEAFKTLCRHEGIIPALESSHALAHALKM--MREQPEKEQLLVVNLSGR---GDKDIFTVHD