d1ce8a1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1ce8_A1	d1ce8a1	A414-A468	All alpha proteins	Carbamoyl phosphate synthetase, large subunit connection domain	Carbamoyl phosphate synthetase, large subunit connection domain	Carbamoyl phosphate synthetase, large subunit connection domain	Carbamoyl phosphate synthetase, large subunit connection domain
1ce8_A2	d1ce8a1	A469-A524	All alpha proteins	Carbamoyl phosphate synthetase, large subunit connection domain	Carbamoyl phosphate synthetase, large subunit connection domain	Carbamoyl phosphate synthetase, large subunit connection domain	Carbamoyl phosphate synthetase, large subunit connection domain

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	45	0.08889	2.36303	70.55556	-12.28804
dali	46	0.08696	2.24092	69.56522	-12.49966
tm	46	0.10870	2.46618	67.93478	-15.37333
fast	42	0.09524	2.15976	71.42857	-10.45128

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1ce8_A1   slddpeaLTKIRRELKDAga--dRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEE------
1ce8_A2   -------LVRLEEKVAEVgitglNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDqydlhp

DALI alignment      superposition in PDB format     colored superposition in PyMol

1ce8_A1   slddpeaLTKIRRELKDAgaDRIW--YIADAFRAGLSVDGVFNLTNIDRWFLVQIEE------
1ce8_A2   -------LVRLEEKVAEVgiTGLNadFLRQLKRKGFADARLAKLAGVREAEIRKLRDqydlhp

TM alignment      superposition in PDB format     colored superposition in PyMol

1ce8_A1   SLDDPEALTKIRRELKDAG-ADRI--WYIADAFRAGLSVDGVFNLT-NI--DR-WFLVQ-I-EE-
1ce8_A2   -------LVRLEEKVAEVGITGLNADF-LRQLKRKGFADARLAKLAGVREAEIRKL-RDQYDLHP

FAST alignment      superposition in PDB format     colored superposition in PyMol

1ce8_A1   SLDDPEALTKIRRELKDAGADR-------IWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEE-------
1ce8_A2   -------LVRLEEKVAE-----VGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLR-DQYDLHP