d1dmr_2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1dmr_A1	d1dmr_2	A377-A500,A85-A145	Alpha and beta proteins (a/b)	Formate dehydrogenase/DMSO reductase, domains 1-3	Formate dehydrogenase/DMSO reductase, domains 1-3	Formate dehydrogenase/DMSO reductase, domains 1-3	Dimethylsulfoxide reductase (DMSO reductase)
1dmr_A2	d1dmr_2	A146-A258,A259-A376	Alpha and beta proteins (a/b)	Formate dehydrogenase/DMSO reductase, domains 1-3	Formate dehydrogenase/DMSO reductase, domains 1-3	Formate dehydrogenase/DMSO reductase, domains 1-3	Dimethylsulfoxide reductase (DMSO reductase)

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	95	0.13684	2.71405	59.47368	4.73616
dali	119	0.10924	3.40381	56.72269	-0.38970
tm	126	0.09524	3.53081	53.37302	-2.02110
fast	89	0.11236	2.63211	58.70787	5.84428

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1dmr_A1 tdggaatkgpewlaasgasvipvarvvdmlenpgaefdfngtrskfpDVKMAYWVGGNPFVHHQ--------DRNRMVKAWE-klETFVVHDFQWTPTARHA-DIVLPATTSyerndietigdysntgilamkk----------------------------------------sWDQALDLVAAEVKRVeetygpeGVFGGSyGWKspg--rlhNCTTLLRRMLTLAGg-----yVNGAgd------------------ 1dmr_A2 ----------------ystgaaqvimphvvgtlevyeqqtawpvlaeNTEVMVFWAADPIKTSQigwvipehGAYPGLEALKakgTKVIVIDPVRTKTVEFFgAEHITPKPQtdvaimlgmahtlvaed-----lydkdfianytsgfdkflpyldgetdstpktaewaegisgvPAETIKELARLFESK-------RTMLAA-GWSmqrmhhgeQAHWMLVTLASMLGqiglpggGFGLsyhysgggtpstsgpalagi

DALI alignment superposition in PDB format colored superposition in PyMol 1dmr_A1 ----------tdGGAAtkgpewlaasgasviPVARvVDMLENpgaefdfngtrskfpDVKMAYWVGGNPFVHH--------QDRNRMVKAWE-KLETFVVHDFQWTPTARHA-DIVLPATTS-----------------------------------yerndietigdysntgilamkksWDQALDLVAAEVKRVeetygpeGVFGGSyGWKS-PGRLH-NCTTLLRRMLTLAGG------YVNGA-----------------gd 1dmr_A2 ystgaaqvimphVVGT----------levyeQQTA-WPVLAE---------------NTEVMVFWAADPIKTSqigwvipeHGAYPGLEALKaKGTKVIVIDPVRTKTVEFFgAEHITPKPQtdvaimlgmahtlvaedlydkdfianytsgfdkflpyldgetdstpktaewaegisgvPAETIKELARLFESK-------RTMLAA-GWSMqRMHHGeQAHWMLVTLASMLGQiglpggGFGLSyhysgggtpstsgpalagi

TM alignment superposition in PDB format colored superposition in PyMol 1dmr_A1 --------TD-GGA------ATKGPEWLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHH--------QDRNRMVKAWE-KLETFVVHDFQWTPTAR-HADIVLPATTSY--------------------------------------------------------ERNDIETIGDYSNTGILAMKKSWDQALDLVAAEVKRVEETYGPEGVFGGSYGWK-SPGRLHNCTTLLRRMLTLAGGY-----VNGAG--D---------------- 1dmr_A2 YSTGAAQVIMPHVVGTLEVY---------------EQQ-TAWPVLA-E--------------NTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTAEWAEGISG---------------------VPAETIKELARLFESK-------RTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGI

FAST alignment superposition in PDB format colored superposition in PyMol 1dmr_A1 TDGGAATKGPEWLAASGASVIPVARV-------------------------VDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQD----------RNRMVKAWEKLE-----TFVVHDFQWTPTARHAD--IVLPATTSYERNDIETIGDYSNTGILAMKKSW------------------------------------------------------------DQALDLVAAEVKRVEETYGPEG-VFGGSYGWKSPGRLHN--------CTTLLRRMLTLAGGYVNGAGD------------------------------- 1dmr_A2 --------------------------YSTGAAQVIMPHVVGTLEVYEQQTAWPVLAE---------------NTEVMVFWAADPIKTS--QIGWVIPEHGAYPGLEAL----KAKGTKVIVIDPVRTKTVEFF-GAEHITPKP-------------------------QTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTAEWAEGISGVPAETIKELARLFESK--------RTMLAAGWSM-------QRMHHGEQAHWMLVTLASMLG--------QIGLPGGGFGLSYHYSGGGTPSTSGPALAGI