d1e3pa3

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1e3p_A3	d1e3pa3	A3-A151	Alpha and beta proteins (a+b)	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribonuclease PH domain 1-like	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4
1e3p_A4	d1e3pa4	A346-A482	Alpha and beta proteins (a+b)	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribonuclease PH domain 1-like	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	118	0.22881	1.81748	78.81356	-1.14596
dali	123	0.21951	2.24606	75.20325	-1.71752
tm	125	0.21600	2.31422	75.60000	-1.73197
fast	116	0.21552	1.87725	78.01724	-1.34515

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1e3p_A3 nethyaeavidngaFGTRTIRFETGRlARQAAGSAVAYLDdDTMVLSATTASKNpkdqld-------ffPLTVDVEERMYAAGKIPgsffrREGRPSEDAILTCRLIDRPLRPSFKKG--LRNEIQVVATIMALNpdHLYDVVAINAASASTQLAGLP-- 1e3p_A4 --------------TDIRTLAAEVEA-IPRVHGSALFERG-ETQILGVTTLNMLrmeqqldtlspvtrkRYMHNYNFPPYSVGETG-----RVGSPKRREIGHGALAERAIVPVLPTReeFPYAIRQVSEALGSN--GSTSMGSVCASTMSLLNAGVPlk

DALI alignment superposition in PDB format colored superposition in PyMol 1e3p_A3 nethyaeavidngaFGTRTIRFETGrLARQAAGSAVAYLDdDTMVLSATTASKNP-------kdqLDFFPLTVDVEERMYAAGKIPgsffrREGRPSEDAILTCRLIDRPLRPSFKKG--LRNEIQVVATIMALNpdHLYDVVAINAASASTQLAGLP-- 1e3p_A4 --------------TDIRTLAAEVE-AIPRVHGSALFERG-ETQILGVTTLNMLRmeqqldtlspVTRKRYMHNYNFPPYSVGETG-----RVGSPKRREIGHGALAERAIVPVLPTReeFPYAIRQVSEALGSN--GSTSMGSVCASTMSLLNAGVPlk

TM alignment superposition in PDB format colored superposition in PyMol 1e3p_A3 NETHYAEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ-L-------DFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKG--LRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP-- 1e3p_A4 -----------T---DIRTLAAEVE-AIPRVHGSALFERG-ETQILGVTTLN-MLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETG-----RVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSN--GSTSMGSVCASTMSLLNAGVPLK

FAST alignment superposition in PDB format colored superposition in PyMol 1e3p_A3 NETHYAEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLD--------------FFPLTVDVEERMYAAGKIPGSFFR-REGRPSEDAILTCRLIDRPLRPSFKKG---LRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP--- 1e3p_A4 --------------TDIRTLAAEVE-AIPRVHGSALFERG-ETQILGVTTLNM-------LRMEQQLDTLSPVTRKRYMHNYNFPPYSVGET------GRVGSPKRREIGHGALAERAIVPVLPT-REEFPYAIRQVSEALGS--NGSTSMGSVCASTMSLLNAGV-PLK