d1e3pa6

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1e3p_A6	d1e3pa6	A152-A262	Alpha and beta proteins (a+b)	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2-like	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
1e3p_A7	d1e3pa7	A483-A578	Alpha and beta proteins (a+b)	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2-like	Ribonuclease PH domain 2-like	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	75	0.18667	1.89457	76.33333	-4.93787
dali	88	0.15909	3.54349	67.04545	-5.88766
tm	84	0.15476	2.34502	72.02381	-5.95189
fast	81	0.17284	3.18350	69.44444	-5.87916

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1e3p_A6 fsGPIGGVRVALIR--------GQWVAFPTHTELEDAVFDMVVAGRVledgdVAIMMVEAEATektiqlvkdgaeapTEEVVAAGLDAAKPFIKVLCKAQADLAakaakptgefpvfld 1e3p_A7 --APVAGIAMGLISqeingethYVALTDILGAEDAFGDMDFKVAGTK-----EFVTALQLDTKld----------giPASVLAAALKQARDARLHILDVMMEAIdtpdemspn------

DALI alignment superposition in PDB format colored superposition in PyMol 1e3p_A6 fsGPIGGVRVALIR--------GQWVAFPTHTELEDAVFDMVVAGRVLedgdvAIMMVEAEATektiqlvkdgAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAkaAKPTGEFPvfld 1e3p_A7 --APVAGIAMGLISqeingethYVALTDILGAEDAFGDMDFKVAGTKE-----FVTALQLDTK----------LDGIPASVLAAALKQARDARLHILDVMMEAID--TPDEMSPN----

TM alignment superposition in PDB format colored superposition in PyMol 1e3p_A6 FSGPIGGVRVALIR--------GQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEE-VVAAGLDAAKPFIKVLCKAQADLAAKAAKPTG---EFPVFLD 1e3p_A7 -AP-VAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKE-----FVTALQLDTK--L---------DGIPASVLAAALKQARDARLHILDVMMEAID-TPDE-MSPN-------

FAST alignment superposition in PDB format colored superposition in PyMol 1e3p_A6 FSGPIGGVRVALIRG----------QWVAFPTHTELEDAVFDMVVAGRVLEDGDV-AIMMVEAEATEKTIQLVKDGAE---APTEEVVAAGLDAAKPFIKVLCKAQADLAAK-AAKPTGEFPVFLD 1e3p_A7 --APVAGIAMGLI--SQEINGETHYVALTDILGAEDAFGDMDFKVAGTK------EFVTALQLDT-------------KLDGIPASVLAAALKQARDARLHILDVMMEAI--DTPDEMSPN-----