d1efud4

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1efu_B1	d1efub4	B55-B139	Alpha and beta proteins (a+b)	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain
1efu_B2	d1efub2	B140-B282	Alpha and beta proteins (a+b)	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	65	0.12308	1.91315	71.92308	6.48089
dali	65	0.10769	1.89889	71.53846	6.48191
tm	67	0.10448	2.40669	65.29851	-5.89695
fast	62	0.14516	2.00513	72.17742	7.99373

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1efu_B1 vaadGVIKTKIDG-NYGIILEVNCqtdfvakdagFQAFADKVLDAAVAGKITDVE---------------------------------------------VLKAQ---------FEEERVALVakigenINIRRVAALEG---------------------- 1efu_B2 ----DVLGSYQHGaRIGVLVAAKG---------aDEELVKHIAMHVAASKPEFIKpedvsaevvekeyqvqldiamqsgkpkeiaekmvegrmkkftgevSLTGQpfvmepsktVGQLLKEHN------AEVTGFIRFEVgegiekvetdfaaevaamskqs

DALI alignment superposition in PDB format colored superposition in PyMol 1efu_B1 vaadGVIKTKID-GNYGIILEVNCqtdfvakdagFQAFADKVLDAAVAGKITDVE---------------------------------------------VLKAQ---------FEEERVALVakigenINIRRVAALEG---------------------- 1efu_B2 ----DVLGSYQHgARIGVLVAAKG---------aDEELVKHIAMHVAASKPEFIKpedvsaevvekeyqvqldiamqsgkpkeiaekmvegrmkkftgevSLTGQpfvmepsktVGQLLKEHN------AEVTGFIRFEVgegiekvetdfaaevaamskqs

TM alignment superposition in PDB format colored superposition in PyMol 1efu_B1 VAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVE----------------------------------------------VLKAQ---------FEEERVALVAKIGENINIRRVAALEG--------------------- 1efu_B2 ---DVLGSYQHGA-RIGVLVAAK----GA----DEELVKHIAMHVAAS-KPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHN-----AEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS

FAST alignment superposition in PDB format colored superposition in PyMol 1efu_B1 VAADGVIKTKIDG-NYGIILEVNCQTDFVAKDAGF---QAFADKVLDAAVAGKITDVEV----------------------------------------------LKAQ---------FEEERVALVAKIGENINIRRVAALEG---------------------- 1efu_B2 ----DVLGSYQHGARIGVLVAAK------------GADEELVKHIAMHVAASKPEFIK-PEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS