d1ei5a1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1ei5_A1	d1ei5a1	A336-A418	All beta proteins	Streptavidin-like	D-aminopeptidase, middle and C-terminal domains	D-aminopeptidase, middle and C-terminal domains	D-aminopeptidase, middle and C-terminal domains
1ei5_A2	d1ei5a2	A419-A520	All beta proteins	Streptavidin-like	D-aminopeptidase, middle and C-terminal domains	D-aminopeptidase, middle and C-terminal domains	D-aminopeptidase, middle and C-terminal domains

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	76	0.18421	2.34905	77.96053	-1.18561
dali	76	0.15789	2.14395	78.94737	-1.29649
tm	75	0.14667	2.03084	80.00000	-1.23410
fast	71	0.14085	2.42705	78.16901	-1.57108

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1ei5_A1 evsRVEADSAWFGSWLDDETGLVLSLEDAGhGRMKARFg-----TSPEMMDVVSANEARSA-----------VTTIRRDG------ETIELVRAseNLR-LSMKRV-- 1ei5_A2 ---KGEAKHDIIGRYHSDELDADLLLVSEG-GAIYGAFegflgkSDMYPLYSVGSDVWLLPvqrsmdapspgEWKLVFRRddkgeiTGLSVGCW--LARgVEYRRVqp

DALI alignment superposition in PDB format colored superposition in PyMol 1ei5_A1 evsrVEADSAWFGSWLDDETGLVLSLEDAGHgRMKARF-----gTSPEMMDVVSANEARSA-----------VTTIRRD------GETIELVRAsENLRLSMKRV-- 1ei5_A2 ---kGEAKHDIIGRYHSDELDADLLLVSEGG-AIYGAFegflgkSDMYPLYSVGSDVWLLPvqrsmdapspgEWKLVFRrddkgeITGLSVGCW-LARGVEYRRVqp

TM alignment superposition in PDB format colored superposition in PyMol 1ei5_A1 -EVSRVEADSAWFGSWLDDETGLVLSLEDA-GHGRMKARFG-----TSPEMMDVVSANEARSA-----------VTTIRRDG------ETIELVRASENLR-LSMKRV-- 1ei5_A2 K---GEAKHD-IIGRYHSDELDADLLLVSEGG--AIYGAFEGFLGKSDMYPLYSVGSDVWLLPVQRSMDAPSPGEWKLVFRRDDKGEITGLSVGCW--LARGVEYRRVQP

FAST alignment superposition in PDB format colored superposition in PyMol 1ei5_A1 EVSR-VEADSAWFGSWLDDETGLVLSLEDAGHGRMKARFGT--------SPEMMDVVSANEARSAV------------TTIRRDG-------ETIELVRASENLRLSMKRV--- 1ei5_A2 ----KGEAKHDIIGRYHSDELDADLLLVSE-GGAIYGA---FEGFLGKSDMYPLYSVGSDVWLLP-VQRSMDAPSPGEWKLVFR-RDDKGEITGLSVGCWLAR-GVEYRR-VQP