d1exja2

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1exj_A1d1exja2A121-A200Alpha and beta proteins (a+b)Probable bacterial effector-binding domainProbable bacterial effector-binding domainMultidrug-binding domain of transcription activator BmrRMultidrug-binding domain of transcription activator BmrR
1exj_A2d1exja2A201-A277Alpha and beta proteins (a+b)Probable bacterial effector-binding domainProbable bacterial effector-binding domainMultidrug-binding domain of transcription activator BmrRMultidrug-binding domain of transcription activator BmrR

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual430.116282.2756866.86047-10.20230
dali640.093753.9626846.09375-12.17539
tm640.109383.6178251.95312-13.56639
fast480.041673.8130551.04167-15.27663

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   ---lgEVFVLDEEEIRIIQTEaegigpenvlnasYSKLKKFIESADgftnnSYGATFSfqpytsi-demtyRHIFTPVLtnkqi
1exj_A2   ssitpDMEITTIPKGRYACIAynfs--pehyflnLQKLIKYIADRQltvvsDVYELIIpihyspkkqeeyrVEMKIRIA-----

DALI alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   ---LGEVFVLdeEEIRIIQTEaEGIGpENVLNASYSKLKKFIESADGFtnnSYGATFS-fQPYTsidEMTYRHIFTPVLtnkqi
1exj_A2   ssiTPDMEITtiPKGRYACIA-YNFS-PEHYFLNLQKLIKYIADRQLTvvsDVYELIIpiHYSPkkqEEYRVEMKIRIA-----

TM alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   ----LGEVFVLDEEEIRIIQTEAEGIGPEN--VLNASYSKLKKFIESA-DGFTNNSYGATFSF--QPY----TSIDEMTYRHIFTPVLTNKQI
1exj_A2   SSIT-PDMEITTIPKGRYACIAY-NFS--PEHYF-LNLQKLIKYIADRQL-TVVSDVYELIIPIH--YSPKK---QEEYRVEMK-IRI-A---

FAST alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   L-----GEVFVLDE---EEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNN-----------SYGATFSFQPYTSIDEMTYR--------HIFTPVLTNKQI--
1exj_A2   -SSITPDMEITT--IPKGRYACIAYNF--------SPEHYFLNLQKLIKYI-----ADRQLTVVSDVYELIIPIHY-----------SPKKQEEYRVEMKIR-----IA