d1exja2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1exj_A1	d1exja2	A121-A200	Alpha and beta proteins (a+b)	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain	Multidrug-binding domain of transcription activator BmrR	Multidrug-binding domain of transcription activator BmrR
1exj_A2	d1exja2	A201-A277	Alpha and beta proteins (a+b)	Probable bacterial effector-binding domain	Probable bacterial effector-binding domain	Multidrug-binding domain of transcription activator BmrR	Multidrug-binding domain of transcription activator BmrR

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	43	0.11628	2.27568	66.86047	-10.20230
dali	64	0.09375	3.96268	46.09375	-12.17539
tm	64	0.10938	3.61782	51.95312	-13.56639
fast	48	0.04167	3.81305	51.04167	-15.27663

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   ---lgEVFVLDEEEIRIIQTEaegigpenvlnasYSKLKKFIESADgftnnSYGATFSfqpytsi-demtyRHIFTPVLtnkqi
1exj_A2   ssitpDMEITTIPKGRYACIAynfs--pehyflnLQKLIKYIADRQltvvsDVYELIIpihyspkkqeeyrVEMKIRIA-----

DALI alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   ---LGEVFVLdeEEIRIIQTEaEGIGpENVLNASYSKLKKFIESADGFtnnSYGATFS-fQPYTsidEMTYRHIFTPVLtnkqi
1exj_A2   ssiTPDMEITtiPKGRYACIA-YNFS-PEHYFLNLQKLIKYIADRQLTvvsDVYELIIpiHYSPkkqEEYRVEMKIRIA-----

TM alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   ----LGEVFVLDEEEIRIIQTEAEGIGPEN--VLNASYSKLKKFIESA-DGFTNNSYGATFSF--QPY----TSIDEMTYRHIFTPVLTNKQI
1exj_A2   SSIT-PDMEITTIPKGRYACIAY-NFS--PEHYF-LNLQKLIKYIADRQL-TVVSDVYELIIPIH--YSPKK---QEEYRVEMK-IRI-A---

FAST alignment      superposition in PDB format     colored superposition in PyMol

1exj_A1   L-----GEVFVLDE---EEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNN-----------SYGATFSFQPYTSIDEMTYR--------HIFTPVLTNKQI--
1exj_A2   -SSITPDMEITT--IPKGRYACIAYNF--------SPEHYFLNLQKLIKYI-----ADRQLTVVSDVYELIIPIHY-----------SPKKQEEYRVEMKIR-----IA