d1f34b_

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1f34_B1d1f34b_B1-B74Alpha and beta proteins (a+b)Pepsin inhibitor-3Pepsin inhibitor-3Pepsin inhibitor-3Pepsin inhibitor-3
1f34_B2d1f34b_B75-B148Alpha and beta proteins (a+b)Pepsin inhibitor-3Pepsin inhibitor-3Pepsin inhibitor-3Pepsin inhibitor-3

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual470.234043.4743647.872342.85279
dali490.163272.9307156.122451.44825
tm480.229173.0647354.687502.38514
fast480.229173.4634849.479172.70935

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1f34_B1   qflfsmstgpfICTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNvkhd----maptctKPPPFCGPqdmkmf
1f34_B2   --------nfvGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEqqenqppagglsppPPPSFCTV------

DALI alignment      superposition in PDB format     colored superposition in PyMol

1f34_B1   qflfsmstgpFICTVKDNQVFVANLPWTMLegddIQVGKEFAARVEDCTNVKH---------dmapTCTKPPpFCGPqdmkmf
1f34_B2   --------nfVGCSVLGNKLFIDQKYVRDL----TAKDHAEVQTFREKIAAFEeqqenqppagglsPPPPPS-FCTV------

TM alignment      superposition in PDB format     colored superposition in PyMol

1f34_B1   --QFLFSMSTGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAA--R--VEDC--TNVK--------HDMAPTCTKPPPFCGPQDMKMF
1f34_B2   NF----------VGCSVLGNKLFIDQKYVRDLTAKDHAEVQTF-REKIAA--FEEQ--QENQPPAGGL-----SPPPPPSFCTV------

FAST alignment      superposition in PDB format     colored superposition in PyMol

1f34_B1   QFLFSMSTGPFI----CTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNVKHDMAPTC-----------TKPPPFCGPQDMKMF-
1f34_B2   ------------NFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQQ-------ENQPPAGGLSPPPPPSFCT-------V