d1fo4a5

d1fo4a5_1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1jro_B1	d1jrob2	B176-B261	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Xanthine dehydrogenase chain B, C-terminal domain
1jro_B3	d1jrob2	B461-B612	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Xanthine dehydrogenase chain B, C-terminal domain

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	79	0.15190	2.35193	69.93671	2.56130
dali	85	0.14118	2.46189	67.94118	2.31923
tm	86	0.13953	2.55110	66.27907	1.57680
fast	78	0.12821	2.68225	65.38462	3.47804

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1jro_B1 ---LEGQAALALPAE-GGVVIHCSSQ-----HPSEIQHKVAHALGLAFHDVRVEMr-------rmggGFGGKESQGNHLAIACAVAARATG--------------------------------------------RPCKMRYDRdd------ 1jro_B3 lthLNQAGALVQIYTdGSVALNHGGTemgqgLHAKMVQVAAAVLGIDPVQVRITAtdtskvpntsatAASSGADMNGMAVKDACETLRGRLagfvaaregcaardvifdagqvqasgkswrfaeivaaaymarisLSATGFYATpklswdrl

DALI alignment superposition in PDB format colored superposition in PyMol 1jro_B1 ---LEGQAALALPAE-GGVVIHCSSQ-----HPSEIQHKVAHALGLAFHDVRVEMRR------MGGGF-GGKESQGNHLAIACAVAARAT--------------------------------------------GRPCKMRYDRD------d 1jro_B3 lthLNQAGALVQIYTdGSVALNHGGTemgqgLHAKMVQVAAAVLGIDPVQVRITATDtskvpnTSATAaSSGADMNGMAVKDACETLRGRlagfvaaregcaardvifdagqvqasgkswrfaeivaaaymariSLSATGFYATPklswdrl

TM alignment superposition in PDB format colored superposition in PyMol 1jro_B1 ---LEGQAALALPAE-GGVVIHCSSQ-----HPSEIQHKVAHALGLAFHDVRVEMRR------MGGGF-GGKESQGNHLAIACAVAARAT-------------------------------------------GR-PCKMRYDRDD------ 1jro_B3 LTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRL

FAST alignment superposition in PDB format colored superposition in PyMol 1jro_B1 LE-----GQAALALPAEG-GVVIHCSSQH------PSEIQHKVAHALGLAFHDVRVEM-------RRMGGG-FGGKESQGNHLAIACAVAARATGR----------------------------------------------PCKMRYDRDD-------- 1jro_B3 --LTHLNQAGALVQIYTDGSVALNHGGT-EMGQGLHAKMVQVAAAVLGIDPVQVRIT-ATDTSKVPNTSATAASSGADMNGMAVKDACETLRGR--LAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYAT--PKLSWDRL