d1fo4a5

d1fo4a5_2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1jro_B2	d1jrob2	B262-B380	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Xanthine dehydrogenase chain B, C-terminal domain
1jro_B4	d1jrob2	B613-B761	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Xanthine dehydrogenase chain B, C-terminal domain

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	76	0.09211	2.65230	61.84211	-6.11211
dali	106	0.10377	3.58929	54.48113	-12.93770
tm	105	0.12381	3.27660	57.85714	-9.62473
fast	76	0.06579	2.59373	61.18421	-4.45910

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1jro_B2 --dmvitgkRHDFRIRYRIGADa-SGKLlGA-DFVHLARCGWSaDLSLPVCDRAMLHADGsyfv-----------------------------palRIESHRLRTNT-----qsntafrGFGGPQGaLGMERAIEHLARgmgrdpaelralnfydpp 1jro_B4 rgqgrpflyFAYGAAITEVVIDrlTGEN-RIlRTDILHDAGAS-LNPALDIGQIEGAYVQgagwltteelvwdhcgrlmthapstykipafsdrprIFNVALWDQPNreetifrskavgEPPFLLG-ISAFLALHDACAacgphwpdlqapa-----

DALI alignment superposition in PDB format colored superposition in PyMol 1jro_B2 -----DMVItgkrHDFRIRYRIGADASGKLLGA-DFVHLARCGWSAD--LSLPVCDRAML-HADGSYF-----------------------vPALR--IESHRLRTNT------QSNTAFrGFGGPQgALGMERAIEHLARGMG-RDPAelRALNFydpp 1jro_B4 rgqgrPFLY---fAYGAAITEVVIDRLTGENRIlRTDILHDAGASLNpaLDIGQIEGAYVqGAGWLTTeelvwdhcgrlmthapstykipafSDRPriFNVALWDQPNreetifRSKAVG-EPPFLL-GISAFLALHDACAACGpHWPD--LQAPA----

TM alignment superposition in PDB format colored superposition in PyMol 1jro_B2 ----DM--VITGKRHDFRIRYRIGADASGKLLGAD-FVHLARCGWSAD--LSLPVC-DRAMLHADGSYF---------------------V--PALR-IESHRLRTNTQ-------SNTAFRGF-GGPQGALGMERAIEHLARGMG-R-DPAELRALNFYDPP 1jro_B4 RGQG-RPF--LYFAYGA-AITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVG--EPPFLLG-ISAFLALHDACAACGPHWPDL--QA-PA----

FAST alignment superposition in PDB format colored superposition in PyMol 1jro_B2 DMVITG--------KRHDFRIRYRIGAD-ASGKLLGA--DFVHLARCGWSADLSLPVCDRAMLHADGSYFVPAL-------------------------------------RIESHRLRTNTQSNTAFRG--------------FGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPP----------- 1jro_B4 ------RGQGRPFLYFAYGAAITEVVIDRLTGENR--ILRTDILHDAGA-SLNPALDIGQIEGAYV--------QGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQP---------NREETIFRSKAVGEPPFLL-GISAFLALHDACAAC----------------GPHWPDLQAPA