d1fx8a

d1fx8a_

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1fx8_A1	d1fx8a_	A6-A136	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	Aquaporin-like	Glycerol uptake facilitator protein GlpF
1fx8_A2	d1fx8a_	A137-A259	Membrane and cell surface proteins and peptides	Aquaporin-like	Aquaporin-like	Aquaporin-like	Glycerol uptake facilitator protein GlpF

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	99	0.17172	1.91320	73.48485	24.36786
dali	103	0.18447	1.86787	75.72816	23.97131
tm	103	0.18447	1.85756	76.45631	23.71690
fast	97	0.18557	1.66976	77.06186	25.90997

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1fx8_A1 -------TLKGQCIAEFLGTGLLIFFGVGCVAAlkvaGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACf------------dkRKVIPFIVSQVAGAFCAAALVYGL-YYNLffdfeqthhivrgsvesvdlagtfs 1fx8_A2 typnphiNFVQAFAVEMVITAILMGLILALTDDg---NGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWlagwgnvaftggrdiPYFLVPLFGPIVGAIVGAFAYRKLiGRHL-------------------------

DALI alignment superposition in PDB format colored superposition in PyMol 1fx8_A1 -------TLKGQCIAEFLGTGLLIFFGVGCVAalKVAGASFGQwEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFA--------CFDK----RKVIPFIVSQVAGAFCAAALVYG-LYYNLffdfeqthhivrgsvesvdlagtfs 1fx8_A2 typnphiNFVQAFAVEMVITAILMGLILALTD--DGNGVPRGP-LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAwlagwgnvAFTGgrdiPYFLVPLFGPIVGAIVGAFAYRKlIGRHL-------------------------

TM alignment superposition in PDB format colored superposition in PyMol 1fx8_A1 -------TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFA--------CFDK----RKVIPFIVSQVAGAFCAAALVYG-LYYNLFFDFEQTHHIVRGSVESVDLAGTFS 1fx8_A2 TYPNPHINFVQAFAVEMVITAILMGLILALTD-D-GNGVPRGP-LAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHL-------------------------

FAST alignment superposition in PDB format colored superposition in PyMol 1fx8_A1 -------TLKGQCIAEFLGTGLLIFFGVGCVAALK-VAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKR-----------------KVIPFIVSQVAGAFCAAALVYG-LYYNLFFDFEQTHHIVRGSVESVDLAGTFS 1fx8_A2 TYPNPHINFVQAFAVEMVITAILMGLILALTD---DGNGVPRG-PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFA-----WLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHL-------------------------