d1g61a_

d1g61a__1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1g61_A1	d1g61a_	A2003-A2046	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	Ribosome anti-association factor eIF6 (aIF6)	Ribosome anti-association factor eIF6 (aIF6)
1g61_A2	d1g61a_	A2047-A2089	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	Ribosome anti-association factor eIF6 (aIF6)	Ribosome anti-association factor eIF6 (aIF6)

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	43	0.16279	1.92949	73.25581	7.22363
dali	43	0.16279	1.92949	73.25581	7.22363
tm	41	0.14634	1.82368	76.82927	6.42745
fast	42	0.16667	1.79813	75.00000	7.43556

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1g61_A1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLEt
1g61_A2   KCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK-

DALI alignment      superposition in PDB format     colored superposition in PyMol

1g61_A1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLEt
1g61_A2   KCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK-

TM alignment      superposition in PDB format     colored superposition in PyMol

1g61_A1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVS--EVLET
1g61_A2   KCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFL--K-

FAST alignment      superposition in PDB format     colored superposition in PyMol

1g61_A1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLET-
1g61_A2   KCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFL--K