d1g61a__2

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1g61_A3d1g61a_A2090-A2136Alpha and beta proteins (a+b)Pentein, beta/alpha-propellerPenteinRibosome anti-association factor eIF6 (aIF6)Ribosome anti-association factor eIF6 (aIF6)
1g61_A4d1g61a_A2137-A2180Alpha and beta proteins (a+b)Pentein, beta/alpha-propellerPenteinRibosome anti-association factor eIF6 (aIF6)Ribosome anti-association factor eIF6 (aIF6)

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual400.225001.5312781.875008.35634
dali410.219511.5559480.487808.02960
tm410.195121.5582882.317076.81614
fast390.230771.5061683.333338.74382

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ennldLNVEII-ksKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN
1g61_A4   -----VEVEIGtiaELPTVGSNAVVTNKGCLTHPLVeDDELEFLKSLFK

DALI alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ennldLNVEIIK-sKNTALGNLILTNDKGALISPELKD-FKKDIEDSLN
1g61_A4   -----VEVEIGTiaELPTVGSNAVVTNKGCLTHPLVEDdELEFLKSLFK

TM alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ENNLDLNVEIIKS-KNTALGNLILTNDKGALISPELKD--FKKDIEDSLN
1g61_A4   -----VEVEIGTIAELPTVGSNAVVTNKGCLTHPL-VEDDELEFLKSLFK

FAST alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ENNLDLNVEIIKS----KNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN
1g61_A4   -----VEVEI---GTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK