d1g61a_

d1g61a__2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1g61_A3	d1g61a_	A2090-A2136	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	Ribosome anti-association factor eIF6 (aIF6)	Ribosome anti-association factor eIF6 (aIF6)
1g61_A4	d1g61a_	A2137-A2180	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	Ribosome anti-association factor eIF6 (aIF6)	Ribosome anti-association factor eIF6 (aIF6)

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	40	0.22500	1.53127	81.87500	8.35634
dali	41	0.21951	1.55594	80.48780	8.02960
tm	41	0.19512	1.55828	82.31707	6.81614
fast	39	0.23077	1.50616	83.33333	8.74382

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ennldLNVEII-ksKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN
1g61_A4   -----VEVEIGtiaELPTVGSNAVVTNKGCLTHPLVeDDELEFLKSLFK

DALI alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ennldLNVEIIK-sKNTALGNLILTNDKGALISPELKD-FKKDIEDSLN
1g61_A4   -----VEVEIGTiaELPTVGSNAVVTNKGCLTHPLVEDdELEFLKSLFK

TM alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ENNLDLNVEIIKS-KNTALGNLILTNDKGALISPELKD--FKKDIEDSLN
1g61_A4   -----VEVEIGTIAELPTVGSNAVVTNKGCLTHPL-VEDDELEFLKSLFK

FAST alignment      superposition in PDB format     colored superposition in PyMol

1g61_A3   ENNLDLNVEIIKS----KNTALGNLILTNDKGALISPEL-KDFKKDIEDSLN
1g61_A4   -----VEVEI---GTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK