d1h6kc1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1n52_A1	d1n52a1	A26-A142	All alpha proteins	alpha-alpha superhelix	ARM repeat	MIF4G domain-like	CBP80, 80KDa nuclear cap-binding protein
1n52_A3	d1n52a3	A481-A616	All alpha proteins	alpha-alpha superhelix	ARM repeat	MIF4G domain-like	CBP80, 80KDa nuclear cap-binding protein

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	94	0.05319	3.05819	55.31915	-1.61014
dali	99	0.07071	3.14285	52.77778	-1.60979
tm	101	0.05941	3.64738	49.50495	-3.21460
fast	87	0.03448	3.79093	44.82759	0.37806

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1n52_A1 ------------------ETEDHLESLICKVgeksacslesnlegLAGVLEADLPN-------YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARN---YNFGGEFVEAMIRQLKEslkannynEAVYLVRFLSDLVNCHVIAa 1n52_A3 ptciykygdessnslpghSVALCLAVAFKSKa-------------TNDEIFSILKDvpnfnplKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLaesDEGKLHVLRVMFEVWRN--------HPQMIAVLVDKMIRTQIVDc

DALI alignment superposition in PDB format colored superposition in PyMol 1n52_A1 ------------------ETEDHLESLICKVgeksacslesNLEGLAGVLEADLPN----YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY---NFGGEFVEAMIRQLKESlkannyneAVYLVRFLSDLVNCHVIAA 1n52_A3 ptciykygdessnslpghSVALCLAVAFKSK----------ATNDEIFSILKDVPNfnplKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAesdEGKLHVLRVMFEVWRNH--------PQMIAVLVDKMIRTQIVDC

TM alignment superposition in PDB format colored superposition in PyMol 1n52_A1 ------------E--TEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNY-KSKILRL-LCTVARLLPE---KLTIYTT-LVGLLNARN-YN--FGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 1n52_A3 PTCIYKYGDESSNSLPGHSVALCLAVAFK-S---K-ATNDEIFSIL-KDV-PNFNPLKIEVFVQTLLHLAAKSFSHSFSALAKF-HEVFKTLAESDEGKLHVL-RVMFEV-WR----N--HPQMIAVLVDKMIRTQIVDC

FAST alignment superposition in PDB format colored superposition in PyMol 1n52_A1 E-------------------TEDHLESLICKVGEKSACSL---ESNLEGLAGVLEADLPNYK----SKILRLLCTVARL-------LPEKLTIYT----TLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 1n52_A3 -PTCIYKYGDESSNSLPGHSVALCLAVAFKS---------KATNDEIFSILKDV--------PNFNPLKIEVFVQT---LLHLAAKSFSHSFSALAKFHEVFKTLAE-SDEGKLHVLRVMFEVWRNH--------PQMIAVLVDKMIRTQIVDC