d1hh2p2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1hh2_P1	d1hh2p2	P199-P278	Alpha and beta proteins (a+b)	Alpha-lytic protease prodomain-like	Prokaryotic type KH domain (KH-domain type II)	Prokaryotic type KH domain (KH-domain type II)	Transcription factor NusA, C-terminal domains
1hh2_P2	d1hh2p3	P279-P344	Alpha and beta proteins (a+b)	Alpha-lytic protease prodomain-like	Prokaryotic type KH domain (KH-domain type II)	Prokaryotic type KH domain (KH-domain type II)	Transcription factor NusA, C-terminal domains

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	62	0.14516	2.05529	75.80645	-11.40977
dali	62	0.16129	1.98469	78.22581	-10.32834
tm	64	0.14062	1.83485	77.73438	-10.03231
fast	61	0.14754	1.85868	77.86885	-12.10985

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1hh2_P1   rVPEFVIGLMKleipevengIVEIKAIAR-EPGv-RTKVAVAsndpnvDPIGACIGEGGSRIAAILKELKgEKLDVLKWSDD
1hh2_P2   -PKQLIANALA---------PATVIEVEIlDKEnkAARVLVPp-----TQLSLAIGKGGQNARLAAKLTG-WKIDIKPIMNL

DALI alignment      superposition in PDB format     colored superposition in PyMol

1hh2_P1   rVPEFVIGLMKleipevengivEIKAIAREP--GVRTKVAVASndpnvDPIGACIGEGGSRIAAILKELkGEKLDVLKWSDD
1hh2_P2   -PKQLIANALA---------paTVIEVEILDkeNKAARVLVPP-----TQLSLAIGKGGQNARLAAKLT-GWKIDIKPIMNL

TM alignment      superposition in PDB format     colored superposition in PyMol

1hh2_P1   RVPEFVIGLMKLEIPEVENGIVEIKAIAR--EPGVRTKVAVASNDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD
1hh2_P2   -PKQLIANALA--P--A-----TVIEVEILDKENKAARVLVPP-----TQLSLAIGKGGQNARLAAKLTG-WKIDIKPIMNL

FAST alignment      superposition in PDB format     colored superposition in PyMol

1hh2_P1   RVPEFVIGLMKLEIPEVENGI--VEIKAIAR-EPGV-RTKVAVASNDPNVD-PIGACIGEGGSRIAAILKELKGEKLDVLKWSDD
1hh2_P2   -PKQLIANAL-----------APATVIEVEILDKENKAARVLVPP------TQLSLAIGKGGQNARLAAKLTG-WKIDIKPIMNL