d1hsla

d1hsla_

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1hsl_A1	d1hsla_	A1-A103	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like	Histidine-binding protein
1hsl_A2	d1hsla_	A104-A238	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like	Histidine-binding protein

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	74	0.17568	4.70917	49.32432	10.73426
dali	84	0.15476	4.54539	44.04762	8.91574
tm	84	0.14286	3.04300	59.82143	5.67417
fast	71	0.16901	4.10429	51.40845	8.94672

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1hsl_A1 ---AIPQKIRIGTDPTYapfesknaqgelvgFDIDLAKE-LCKRintQCTFVENP-LDALIPSLKAKKIDAIMSSls------itEKRQQEIAFTdkl------yaADSRLVVAKNSdiq-------------------------------- 1hsl_A2 ptvASLKGKRVGVLQGT--------------TQETFGNEhWAPK---GIEIVSYQgQDNIYSDLTAGRIDAAFQDevaasegflkQPVGKDYKFGgpavkdeklfgVGTGMGLRKEDnelrealnkafaemradgtyeklakkyfdfdvygg

DALI alignment superposition in PDB format colored superposition in PyMol 1hsl_A1 ---aIPQKIRIGTDPTyapfesknaqgelvGFDIDLAKELCKRIntQCTFVEN-PLDALIPSLKAKKIDAIMsSLSI--TEKRQQ-----EIAFT-DKLY-----aADSRLVVAKNSDIQ-------------------------------- 1hsl_A2 ptvaSLKGKRVGVLQG--------------TTQETFGNEHWAPK--GIEIVSYqGQDNIYSDLTAGRIDAAF-QDEVaaSEGFLKqpvgkDYKFGgPAVKdeklfgVGTGMGLRKEDNELrealnkafaemradgtyeklakkyfdfdvygg

TM alignment superposition in PDB format colored superposition in PyMol 1hsl_A1 ----AIPQKIRIGTDPTYAPFESKNAQGELVGFDIDLAKELCKRINTQCTFVENPLD-ALIPSLKAKKIDAIMSSLSIT--EK-RQQ---E--IAFT-DKLY-----AADSRLVV---AKNS--DI--Q------------------------- 1hsl_A2 PTVA-SLKGKRVGVLQGT-TQE---------TFGNEHWAP--K----GIEIVSYQGQDNIYSDLTAGRIDAAF--QDEVAASEGFLKQPVGKDYKFGGPAVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG

FAST alignment superposition in PDB format colored superposition in PyMol 1hsl_A1 AI-----PQKIRIGTDPTYAPFESKNAQGELVGFDIDLAKELCKRIN---TQCTFVENP-LDALIPSLKAKKIDAIMSSLSI----TEKRQQEIA---------FTDKLYAA-------DSRLVVAKNSDIQ----------------------------------- 1hsl_A2 --PTVASLKGKRVGVLQG--------------TTQETFGNEH-----WAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQD---EVAASEGFLK---QPVGKDYKFGGPAVK--DEKLFGVGTGMGLRKED---NELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG