d1i1qa_

d1i1qa__2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1i1q_A2	d1i1qa_	A99-A177,A58-A98	Alpha and beta proteins (a+b)	ADC synthase	ADC synthase	ADC synthase	Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE
1i1q_A3	d1i1qa_	A258-A310,A466-A516	Alpha and beta proteins (a+b)	ADC synthase	ADC synthase	ADC synthase	Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	68	0.16176	4.06059	46.32353	-6.51344
dali	65	0.16923	3.31627	53.46154	-6.66320
tm	59	0.08475	4.76604	40.25424	-28.33613
fast	55	0.18182	3.48260	49.54545	-5.31126

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1i1q_A2 ----------AGRVLRFppvsplldenarlcsLSVFDAFRLLQGVVNIPtqereamFFGGLFAydlvagfealphleagnncpDYCFYL------ALRITALGDTVTIQAL------------SDNGASLLPLLDTALpagvendvlp 1i1q_A3 ageifqvvpsRRFSLPC---------------PSPLAAYYVLKKSNPSP-------YMFFMQDn------------------dFTLFGAspesivIRSALVENGIATVQAGagivldsvpqseADETRNKARAVLRAIatahha----

DALI alignment superposition in PDB format colored superposition in PyMol 1i1q_A2 ----------AGRVLRFppvsplldenarlcslSVFDAFRLLQGVVniptqereAMFFGGLFAYDlvagfealphleagnncpDYCFYL------ALRITALGDTVTIQAL---------------SDNGASLlplldtALPAGvendvlp 1i1q_A3 ageifqvvpsRRFSLPC---------------pSPLAAYYVLKKSN-------pSPYMFFMQDND------------------FTLFGAspesivIRSALVENGIATVQAGagivldsvpqseadeTRNKARAvlraiaTAHHA-------

TM alignment superposition in PDB format colored superposition in PyMol 1i1q_A2 ------AGRVLRFPPVSPLLDENAR--LC---SLSVF-DAFRLLQGVVNIPTQEREAMFFGGLFAYDLVAGFEALP--H--------LEAGNNCPDYCFYLALRITALG-------DTVTIQALSDNGASLLPLLDTA-LP---------------AGVENDVLP 1i1q_A3 AGEIFQVVPSRRFSLPCPSPLA--AYYVLKKS----NP-------------------------SPY-MF---FMQDNDFTLFGASPE------SIVI--------RSALVENGIATVQAGAGIVLD--SV-PQSEADETRNKARAVLRAIATAHHA---------

FAST alignment superposition in PDB format colored superposition in PyMol 1i1q_A2 ----------AGRVLRFPPVSPLLDENARLCSLS--VFDAFRLLQGVVNIPTQEREAMFFGG-----LFAYDLVAGFEALPHLEAGNNCPD-YCFYLAL--------RITALGDTVTIQALS----------------DNGASLLPLLDTALPAGVENDVLP------- 1i1q_A3 AGEIFQVVPSRRFSLPC-----------------PSPLAAYYVLKKSNPS------------PYMFFMQDND-------------------FTLFGA--SPESIVIRSALVENGIATVQAG-AGIVLDSVPQSEADETRNKARAVLRA--------------IATAHHA