d1i1qa__3

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1i1q_A3d1i1qa_A258-A310,A466-A516Alpha and beta proteins (a+b)ADC synthaseADC synthaseADC synthaseAnthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE
1i1q_A4d1i1qa_A387-A465,A311-A386Alpha and beta proteins (a+b)ADC synthaseADC synthaseADC synthaseAnthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual810.123463.7217248.76543-4.56251
dali870.137933.8463448.27586-5.38080
tm890.101123.6860952.24719-6.79301
fast760.118423.5484651.97368-2.99819

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1i1q_A3   ----ageIFQVVPSRRFSLPC---PSPLAAYYVLKksn-----------------------pspYMFFMQDN-DFTLFGaspesivirSALVEN--GIATVQAGAGIVL--------------------dsvPQSEADETRNKARAVLRAIATAHha-------
1i1q_A4   ltkvdrySYVMHLVSRVVGELrhdLDALHAYRACMnmgtlsgapkvramqliadaegqrrgsygGAVGYFTAhGDLDTC---------SLKYDAasRQIEIYPIAGTRPrgrradgtldrdldsrieldmrtDHKELSEHLMLVDLARNDLARICtpgsryvad

DALI alignment      superposition in PDB format     colored superposition in PyMol

1i1q_A3   ----ageIFQVVPSRRFSLPCP---SPLAAYYVLK-----------------------ksnpSPYMFFMQD-NDFTLFgaspesivirSALVE--NGIATVQAGAGI-------------------VLDS-VPQSEADETRNKARAVLRAIATAHHA-------
1i1q_A4   ltkvdrySYVMHLVSRVVGELRhdlDALHAYRACMnmgtlsgapkvramqliadaegqrrgsYGGAVGYFTaHGDLDT---------cSLKYDaaSRQIEIYPIAGTrprgrradgtldrdldsriELDMrTDHKELSEHLMLVDLARNDLARICTPgsryvad

TM alignment      superposition in PDB format     colored superposition in PyMol

1i1q_A3   ---------AGEIFQVVPSRRFSLPCP--S-PLAAYYVLKK--------SN--P----------SP---YMFFMQD-NDFTLFGASPESIVIRSALVE--NGIATVQAGAGIV-----------------L--DS-VPQ-SEADETRNKARAVLRAIATAHHA-------
1i1q_A4   LTKVDRYSY-----VMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDT-------C--SLKYDAASRQIEIYPIAGTRPRGRRADGTLDRDLDSRIELDMRTDHKELSEH-LMLVDLARNDLARICTPGSRYVAD

FAST alignment      superposition in PDB format     colored superposition in PyMol

1i1q_A3   AGEI--------FQVVPSRRFSLPCP----SPLAAYYVLKKSNPSP------------------------------YMFFMQDND-FTLFGASPESIVIRS--ALVEN---GIATVQAGAGIVLDSV------------------------PQSEADETRNKARAVLRAIATAHHA-------
1i1q_A4   ----LTKVDRYSYVMHLVSRVVGEL-RHDLDALHAYRAC-------MNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDT-----------CSLKYD-AASRQIEIYPIAGTR----PRGRRADGTLDRDLDSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRYVAD