d1i1qa_

d1i1qa__3

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1i1q_A3	d1i1qa_	A258-A310,A466-A516	Alpha and beta proteins (a+b)	ADC synthase	ADC synthase	ADC synthase	Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE
1i1q_A4	d1i1qa_	A387-A465,A311-A386	Alpha and beta proteins (a+b)	ADC synthase	ADC synthase	ADC synthase	Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	81	0.12346	3.72172	48.76543	-4.56251
dali	87	0.13793	3.84634	48.27586	-5.38080
tm	89	0.10112	3.68609	52.24719	-6.79301
fast	76	0.11842	3.54846	51.97368	-2.99819

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1i1q_A3 ----ageIFQVVPSRRFSLPC---PSPLAAYYVLKksn-----------------------pspYMFFMQDN-DFTLFGaspesivirSALVEN--GIATVQAGAGIVL--------------------dsvPQSEADETRNKARAVLRAIATAHha------- 1i1q_A4 ltkvdrySYVMHLVSRVVGELrhdLDALHAYRACMnmgtlsgapkvramqliadaegqrrgsygGAVGYFTAhGDLDTC---------SLKYDAasRQIEIYPIAGTRPrgrradgtldrdldsrieldmrtDHKELSEHLMLVDLARNDLARICtpgsryvad

DALI alignment superposition in PDB format colored superposition in PyMol 1i1q_A3 ----ageIFQVVPSRRFSLPCP---SPLAAYYVLK-----------------------ksnpSPYMFFMQD-NDFTLFgaspesivirSALVE--NGIATVQAGAGI-------------------VLDS-VPQSEADETRNKARAVLRAIATAHHA------- 1i1q_A4 ltkvdrySYVMHLVSRVVGELRhdlDALHAYRACMnmgtlsgapkvramqliadaegqrrgsYGGAVGYFTaHGDLDT---------cSLKYDaaSRQIEIYPIAGTrprgrradgtldrdldsriELDMrTDHKELSEHLMLVDLARNDLARICTPgsryvad

TM alignment superposition in PDB format colored superposition in PyMol 1i1q_A3 ---------AGEIFQVVPSRRFSLPCP--S-PLAAYYVLKK--------SN--P----------SP---YMFFMQD-NDFTLFGASPESIVIRSALVE--NGIATVQAGAGIV-----------------L--DS-VPQ-SEADETRNKARAVLRAIATAHHA------- 1i1q_A4 LTKVDRYSY-----VMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDT-------C--SLKYDAASRQIEIYPIAGTRPRGRRADGTLDRDLDSRIELDMRTDHKELSEH-LMLVDLARNDLARICTPGSRYVAD

FAST alignment superposition in PDB format colored superposition in PyMol 1i1q_A3 AGEI--------FQVVPSRRFSLPCP----SPLAAYYVLKKSNPSP------------------------------YMFFMQDND-FTLFGASPESIVIRS--ALVEN---GIATVQAGAGIVLDSV------------------------PQSEADETRNKARAVLRAIATAHHA------- 1i1q_A4 ----LTKVDRYSYVMHLVSRVVGEL-RHDLDALHAYRAC-------MNMGTLSGAPKVRAMQLIADAEGQRRGSYGGAVGYFTAHGDLDT-----------CSLKYD-AASRQIEIYPIAGTR----PRGRRADGTLDRDLDSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRYVAD