d1idua_

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1idu_A1d1idua_A3-A239All alpha proteinsAcid phosphatase/Vanadium-dependent haloperoxidaseAcid phosphatase/Vanadium-dependent haloperoxidaseChloroperoxidaseChloroperoxidase
1idu_A2d1idua_A240-A578All alpha proteinsAcid phosphatase/Vanadium-dependent haloperoxidaseAcid phosphatase/Vanadium-dependent haloperoxidaseChloroperoxidaseChloroperoxidase

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual980.163275.0606043.11224-4.55041
dali1160.129314.1968056.68103-5.28313
tm1390.064754.6109050.17986-7.91220
fast850.176472.8799966.47059-3.77619

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1idu_A1   -----------------------------------------svtpiplpkidepeeynTNYILFWNHVGLELNRVThtvg---gpltGPPLSARALGMLHLAIHDAYFSICPptdfttflspdte------------------------naayrlpspngaNDARQAVAGAALKMLSSLYMKpveqpnpnpgani-----------------------------------------sdNAYAQLGLVLDRSVLEApggvdres------------------------------------------------ASFMFGEDVADVFFALLndprgasqegynptpgrykfddepthpvvlipvdpnnpngpkmpfrqyhapfygkttkrfatqseh
1idu_A2   fladppglrsnadetaeyddavrvaiamggaqalnstkrspwqtaqglywaydgsnliGTPPRFYNQIVRRIAVTYkkeedlansevNNADFARLFALVDVACTDAGIFSWKekwefefwrplsgvrddgrpdhgdpfwltlgapatntndipfkppfpayPSGHATFGGAVFQMVRRYYNGrvgtwkddepdniaidmmiseelngvnrdlrqpydptapiedqpgivrtrivrhfdSAWELMFENAISRIFLGvhwrfdaaaardiliptttkdvyavdnngatvfqnvediryttrgtredeeglfpiGGVPLGIEIADEIFNNGlkptppeiqpm-------------------------------------------------------

DALI alignment      superposition in PDB format     colored superposition in PyMol

1idu_A1   -------------------------------------------svtpiplpkidePEEYntNYILFWNHVGLELNRVTHTVG---gpltGPPLSARALGMLHLAIHDAYFSICP------------------------ptdfttflspdtenaayrlpspNGANDARQAVAGAALKMLSSLYM---KPVEqpnpnpganisdnayaQLGL-----------------------------------------VLDRSVleapgGVDR------------------------------------------------------------ESASFMFGEDVADVFFALLNdprgasqegynptpgrykfddepthpvvlipvdpnnpngpkmpfrqyhapfygkttkrFATQS--eh
1idu_A2   fladppglrsnadetaeyddavrvaiamggaqalnstkrspwqtaqglywaydgsNLIG--TPPRFYNQIVRRIAVTYKKEEdlansevNNADFARLFALVDVACTDAGIFSWKekwefefwrplsgvrddgrpdhgdpfwltlgapatntndipfkppfPAYPSGHATFGGAVFQMVRRYYNgrvGTWK-----------ddepdNIAIdmmiseelngvnrdlrqpydptapiedqpgivrtrivrhfdSAWELM----fENAIsriflgvhwrfdaaaardiliptttkdvyavdnngatvfqnvediryttrgtredeeglfPIGGVPLGIEIADEIFNNGL---------------------------------------------------------kPTPPEiqpm

TM alignment      superposition in PDB format     colored superposition in PyMol

1idu_A1   --------------------------------------------------SVTPIPLPKIDEPEEYNTNY--ILFWNHVGLELNRVTHTVGGP-----------LTGPPLSARALGMLHLAIHDAYFSICPPTDFTTFLSPDTENAAYRLPSPNGAN-------------------------------------DARQAVAGAALKMLSSLYMKPVEQPNPNPGANISD------NAYAQL-------------------------------------GL--V--LDRSV-LEAPGGVDRESASFM------------------------------------------------FGEDVADVFFALLNDPRGASQEGYNPTPGRYKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRFATQS----EH
1idu_A2   FLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQGLYW---------------AYDGSNLIGTPPRFYNQIVRRIAVTYKKEEDLANSEVNNADFARLFALVDVACTDAGIFSWKEKWE---------------------FEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVR-R----Y--YNGRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHFDSAWELMFENAISRIFLGVHWRFDAAAARDILIPTTTKDVYAVDNNGATVFQNVEDIRYTTRGTREDEEGLFPIGGVPLGIEIADEIFN-----------------------------------------------------NGLKPTPPEIQPM--

FAST alignment      superposition in PDB format     colored superposition in PyMol

1idu_A1   SVTPIPLPKIDEPEEYNT-----------------------------------------------------------NYILFWNHVGLELNRVTHTVGGPLTG------------PPLSARALGMLHLAIHDAYFSICPPTDFTTFLSPDTENAAYRLPSPNGAN---------------------------------------------------DARQAVAGAALKMLSSLYMKPVEQPNPNPGANISDNAYAQ----------------------------------------------------------LGLVLDRSVLEAPGGVDRESA--------------------------------------------------------------SFMFGEDVADVFFALLNDPRGASQEGYNPTPGRYKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRFATQSEH------------
1idu_A2   ------------------FLADPPGLRSNADETAEYDDAVRVAIAMGGAQALNSTKRSPWQTAQGLYWAYDGSNLIGTPPRFYNQIVRRIAVTY---------KKEEDLANSEVNNADFARLFALVDVACTDAGIFSW---------------------------KEKWEFEFWRPLSGVRDDGRPDHGDPFWLTLGAPATNTNDIPFKPPFPAYPSGHATFGGAVFQMVRRYYN---------------------GRVGTWKDDEPDNIAIDMMISEELNGVNRDLRQPYDPTAPIEDQPGIVRTRIVRHFDSAWELMFENAIS----------RIFLGVHWRFDAAAARDILIPTTTKDVYAVDNNGATVFQNVEDIRYTTRGTREDEEGLFPIGGVPLGIEIADEIFNN-------------------------------------------------------------------GLKPTPPEIQPM