d1is2a1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1is2_A1	d1is2a1	A272-A442	All alpha proteins	Bromodomain-like	Acyl-CoA dehydrogenase C-terminal domain-like	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4
1is2_A2	d1is2a2	A475-A603	All alpha proteins	Bromodomain-like	Acyl-CoA dehydrogenase C-terminal domain-like	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	99	0.08081	3.44817	58.58586	-15.15774
dali	119	0.08403	3.26899	58.82353	-17.76505
tm	118	0.08475	3.07832	62.92373	-17.02514
fast	100	0.09000	4.38660	41.50000	-16.91788

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1is2_A1 kltygtmvfvrsFLVGNAAQSLSKACTIAIRYSAVRrqseikqsepepqildFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESig-qgDLSELPELHALTAGLKAFTTwtanagieecrmacgghgyshssgipniyvtftpactfegENTVMMLQTARFLMKIYDQV 1is2_A2 --vdinslegltEAYKLRAARLVEIAAKNLQTHVSHrk-------------sKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIqdkavQAVLRNLCLLYSLYGISQKGgdfleg----------------------------siitgaQLSQVNARILELLTLIRPNA

DALI alignment superposition in PDB format colored superposition in PyMol 1is2_A1 kltygtmvFVRS--FLVGNAAQSLSKACTIAIRYSAVRRqseikqsepepQILDFqtQQYKLFPLLATAYAFHFVGRYMKETYLRINESiGQGD--LSELPELHALTAGLKAFTTWTanagieecrmacgghgyshssgipniyvtFTPACTFeGENTVMMLQTARFLMKIYDQV 1is2_A2 ----vdinSLEGltEAYKLRAARLVEIAAKNLQTHVSHR-----------KSKEV--AWNLTSVDLVRASEAHCHYVVVKVFSDKLPKI-QDKAvqAVLRNLCLLYSLYGISQKGGD---------------------------flEGSIITG-AQLSQVNARILELLTLIRPNA

TM alignment superposition in PDB format colored superposition in PyMol 1is2_A1 ----KLTYGTMVFVRS--FLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQI-LDF-QTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQG-D-LSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMK-IYDQV 1is2_A2 VDIN--------SLEGLTEAYKLRAARLVEIAAKNLQTHVSHR-----------KSKEVAW--NL--TSVDLVRASEAHCHYVVVKVFSDKLPKI-QDKAVQAVLRNLCLLYSLYGISQKGGDFLE--------------------------GS-IITG-AQLSQVNARILELL-TLIRPNA

FAST alignment superposition in PDB format colored superposition in PyMol 1is2_A1 KLTYGTMVFVRS----------FLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDF----QTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQG-DLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTF--------TPACTFEGE-----NTVMMLQTARFLMKIYDQV- 1is2_A2 ------------VDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSH-----------------RKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKI----QDKAVQAVLRNLCLLYSLYGISQKGGD--------------------------FLEGSIITGAQLS----QVNARILELLTLIRPN--------A