d1isva1

d1isva1_1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1isv_A1	d1isva1	A304-A353	All beta proteins	beta-Trefoil	Ricin B-like lectins	Ricin B-like	Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)
1isv_A2	d1isva1	A354-A395	All beta proteins	beta-Trefoil	Ricin B-like lectins	Ricin B-like	Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	35	0.40000	0.67807	95.71429	20.65758
dali	39	0.38462	1.67168	89.10256	17.37121
tm	40	0.35000	1.72960	88.12500	16.88151
fast	37	0.35135	1.35947	89.18919	19.15586

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   sstpppsggGQIKGvgsgRCLDVPnaSTTDGTQVQLYDCHSATNQQWTYT--
1isv_A2   -------daGELRV-ygdKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNsd

DALI alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   sstpppsgGGQIKGVGsGRCLDVPnaSTTDGTQVQLYDCHSATNQQWTYT--
1isv_A2   -------dAGELRVYG-DKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNsd

TM alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   SSTPPPSGGGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT--
1isv_A2   -----D--AGELRVY-GDKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNSD

FAST alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   SSTPPPSGGG---QIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT--
1isv_A2   ----------DAGELRV-YGDKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNSD