d1isva1

d1isva1_2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1isv_A2	d1isva1	A354-A395	All beta proteins	beta-Trefoil	Ricin B-like lectins	Ricin B-like	Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)
1isv_A3	d1isva1	A396-A436	All beta proteins	beta-Trefoil	Ricin B-like lectins	Ricin B-like	Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	35	0.51429	0.57626	97.85714	27.38312
dali	38	0.47368	1.24771	93.42105	25.00711
tm	38	0.47368	1.19759	92.10526	26.10747
fast	37	0.45946	1.21062	91.89189	26.21483

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1isv_A2   daGELRV-ygdKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNsd
1isv_A3   --GSIVGvqsgLCLDAVggGTANGTLIQLYSCSNGSNQRWTRT--

DALI alignment      superposition in PDB format     colored superposition in PyMol

1isv_A2   daGELRVY-GDKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNsd
1isv_A3   --GSIVGVqSGLCLDAVggGTANGTLIQLYSCSNGSNQRWTRT--

TM alignment      superposition in PDB format     colored superposition in PyMol

1isv_A2   DAGELRV-YGDKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNSD
1isv_A3   --GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT--

FAST alignment      superposition in PDB format     colored superposition in PyMol

1isv_A2   DAG-ELRV-YGDKCLDAA--GTGNGTKVQIYSCWGGDNQKWRLNSD
1isv_A3   ---GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT--