d1isva1_3

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1isv_A1d1isva1A304-A353All beta proteinsbeta-TrefoilRicin B-like lectinsRicin B-likeXylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)
1isv_A3d1isva1A396-A436All beta proteinsbeta-TrefoilRicin B-like lectinsRicin B-likeXylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual410.512200.6598596.3414613.02766
dali410.512200.6598596.3414613.02766
tm410.512200.6598596.3414613.02766
fast410.512200.6598596.3414613.02766

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   sstpppsggGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT

DALI alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   sstpppsggGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT

TM alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   SSTPPPSGGGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT

FAST alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   SSTPPPSGGGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT