d1isva1

d1isva1_3

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1isv_A1	d1isva1	A304-A353	All beta proteins	beta-Trefoil	Ricin B-like lectins	Ricin B-like	Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)
1isv_A3	d1isva1	A396-A436	All beta proteins	beta-Trefoil	Ricin B-like lectins	Ricin B-like	Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain)

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	41	0.51220	0.65985	96.34146	13.02766
dali	41	0.51220	0.65985	96.34146	13.02766
tm	41	0.51220	0.65985	96.34146	13.02766
fast	41	0.51220	0.65985	96.34146	13.02766

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   sstpppsggGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT

DALI alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   sstpppsggGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT

TM alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   SSTPPPSGGGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT

FAST alignment      superposition in PDB format     colored superposition in PyMol

1isv_A1   SSTPPPSGGGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATNQQWTYT
1isv_A3   ---------GSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGSNQRWTRT