d1itbb1

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1itb_B1d1itbb1B6-B101All beta proteinsImmunoglobulin-like beta-sandwichImmunoglobulinI set domainsType-1 interleukin-1 receptor
1itb_B2d1itbb2B102-B204All beta proteinsImmunoglobulin-like beta-sandwichImmunoglobulinI set domainsType-1 interleukin-1 receptor

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual800.200002.2705970.625004.91840
dali870.172412.3463068.678162.75849
tm890.157302.4822170.224721.89887
fast770.207792.1725471.753253.31134

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1itb_B1   --ckereeKIILVSSANEIDVRPCPLnpn-----ehKGTITWYKdDSKtPVSTEQAsrIHQHKEKLWFVPAKVEDSGHYYCVVRNS----SYCLRIKISAKFVENEp
1itb_B2   nlcynaqaIFKQKLPVAGDGGLVCPYmeffknenneLPKLQWYK-DCK-PLLLDNI-hFSGVKDRLIVMNVAEKHRGNYTCHASYTylgkQYPITRVIEFITLEEN-

DALI alignment      superposition in PDB format     colored superposition in PyMol

1itb_B1   --ckereEKIILVSSANEIDVRPCP-LNPNE----HKGTITWYKDdSKTPvSTEQaSRIHQHKEKLWFVPAKVEDSGHYYCVVRNS----SYCLRIKISAKFVENEp
1itb_B2   nlcynaqAIFKQKLPVAGDGGLVCPyMEFFKnennELPKLQWYKD-CKPL-LLDN-IHFSGVKDRLIVMNVAEKHRGNYTCHASYTylgkQYPITRVIEFITLEEN-

TM alignment      superposition in PDB format     colored superposition in PyMol

1itb_B1   --CKER--EEKIILVSSANEIDVRPCPLNPNEH-----KGTITWYKDDSKTPVSTEQASRIHQHKE-KLWFVPAKVEDSGHYYCVVRNS----SYCLRIKISAKFVENEP
1itb_B2   NL-CYNAQAIF-KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD-CKP-LLLDN-IH-FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN-

FAST alignment      superposition in PDB format     colored superposition in PyMol

1itb_B1   CKEREEKI----------ILVSSANEIDVRPCP-LNPNEHKGT---------ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSS------YCLRIKISAKFVENEP
1itb_B2   --------NLCYNAQAIFKQKLPVAGDGGLVCPYMEFF-----KNENNELPKLQWYK-DCK-PLLLDNI-HFSGVKDRLIVMNVAEKHRGNYTCHASY--TYLGKQYPITRVIEFITLEEN-