d1iwga7

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1iwg_A7	d1iwga7	A7-A37,A331-A498	Membrane and cell surface proteins and peptides	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain
1iwg_A8	d1iwga8	A513-A566,A869-A1036	Membrane and cell surface proteins and peptides	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain	Multidrug efflux transporter AcrB transmembrane domain

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	185	0.16216	2.11013	67.83784	56.18121
dali	193	0.17617	2.09079	68.00518	52.43037
tm	193	0.17617	2.07087	68.65285	52.02121
fast	189	0.16402	2.06478	68.51852	54.43091

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1iwg_A7 -----------------------DRPIFAWVIAIIIMLAGGLAILKLPVAQYPTpfvkisIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEglpPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFfggstGAIYRQFSITIVSAMALSVLVALI--LTPALCATMLK--- 1iwg_A8 fgwfnrmfeksthhytdsvggilRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD-----sGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEgkgLIEATLDAVRMRLRPILMTSLAFILGVMPLVIstgagSGAQNAVGTGVMGGMVTATVLAIFfvPVFFVVVRRRFsrk

DALI alignment superposition in PDB format colored superposition in PyMol 1iwg_A7 -----------------------DRPIFAWVIAIIIMLAGGLAILKLPVAQYPTpfvkiSIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAF-FGGSTGaIYRQFSITIVSAMALSV-LVAL-ILTPALCATMLK--- 1iwg_A8 fgwfnrmfeksthhytdsvggilRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD-----SGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIsTGAGSG-AQNAVGTGVMGGMVTATvLAIFfVPVFFVVVRRRFsrk

TM alignment superposition in PDB format colored superposition in PyMol 1iwg_A7 ----------------------D-RPIFAWVIAIIIMLAGGLAILKLPVAQYPTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMA-FFGGSTGAIYRQFSITIVSAMALSV-LVALI-LTPALCATMLK--- 1iwg_A8 FGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD-----SGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSG-AQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRK

FAST alignment superposition in PDB format colored superposition in PyMol 1iwg_A7 D------------------------RPIFAWVIAIIIMLAGGLAILKLPVAQYPTPFVKISI--HEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMA-FFGGSTGAIYRQFSITIVSAMALSVL-VALIL-TPALCATMLK---- 1iwg_A8 -FGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD-------SGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGS-GAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRR-FSRK