d1jlya1_1

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1jly_A1d1jlya1A1-A53All beta proteinsbeta-TrefoilAgglutininAgglutininAgglutinin
1jly_A2d1jlya1A54-A106All beta proteinsbeta-TrefoilAgglutininAgglutininAgglutinin

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual400.225001.3663586.250000.04853
dali460.217392.3297675.54348-0.01143
tm460.239132.2096775.543480.07390
fast390.230771.9049680.128210.11750

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1jly_A1   aglpVIMCLKSNNHQKYLRYQSdniqqYGLLQFSADKILd-----pLAQFEVEPSKty-
1jly_A2   ---dGLVHIKSRYTNKYLVRWSp---nHYWITASANEPDenksnwaCTLFKPLYVEegn

DALI alignment      superposition in PDB format     colored superposition in PyMol

1jly_A1   aglPVIMCLKSNNHQKYLRYQSDNiqqYGLLQFSADKIL-----dPLAQFEVEPSKTY-
1jly_A2   ---DGLVHIKSRYTNKYLVRWSPN---HYWITASANEPDenksnwACTLFKPLYVEEGn

TM alignment      superposition in PDB format     colored superposition in PyMol

1jly_A1   AGLPVIMCLKSNNHQKYLRYQSDNIQQYGLLQFSADKILD-P-----LAQFEVEPSKT-Y
1jly_A2   ---DGLVHIKSRYTNKYLVRWSPN---HYWITASANEP-DENKSNWACTLFKPLYVEEGN

FAST alignment      superposition in PDB format     colored superposition in PyMol

1jly_A1   AGLP-VIMCLKSNNHQKYLRYQSDNIQQY---GLLQFSADKILDPL---------AQFEVEPSKTY-
1jly_A2   ----DGLVHIKSRYTNKYLVRWS------PNHYWITASANEP----DENKSNWACTLFKPLYVEEGN