d1k2yx1

d1k2yx1_2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1k2y_X2	d1k2yx2	X153-X258	Alpha and beta proteins (a/b)	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphomannomutase/phosphoglucomutase
1k2y_X3	d1k2yx3	X259-X367	Alpha and beta proteins (a/b)	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	Phosphomannomutase/phosphoglucomutase

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	60	0.16667	2.02314	75.00000	1.19097
dali	64	0.17188	2.06889	72.65625	1.48800
tm	69	0.15942	2.71669	66.30435	-0.72345
fast	55	0.18182	1.80119	77.27273	3.35694

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1k2y_X2 vdilpryfkqirddiamaKPMKVVVDCGngvaGVIAPQLIEALGCSVIPLYcevdgnfpnhhpdpgkpeNLKDLIAKVKAENADLGLAFdgdgdrVGVVTN---TGTII-------------------------- 1k2y_X3 -ypdrllmlfakdvvsrnPGADIIFDVKc---TRRLIALISGYGGRPVMWKt-----------------GHSLIKKKMKETGALLAGEM-----sGHVFFKerwFGFDDgiysaarlleilsqdqrdsehvfsaf

DALI alignment superposition in PDB format colored superposition in PyMol 1k2y_X2 vdilpryfkqirddiaMAKP-MKVVVDCGngvAGVIAPQLIEALGCSVIPLYcevdgnfpnhhpdpgkpeNLKDLIAKVKAENADLGLAFDgdgdrVGVVTN---TGTII-------------------------- 1k2y_X3 --ypdrllmlfakdvvSRNPgADIIFDVK---CTRRLIALISGYGGRPVMWK-----------------tGHSLIKKKMKETGALLAGEMS-----GHVFFKerwFGFDDgiysaarlleilsqdqrdsehvfsaf

TM alignment superposition in PDB format colored superposition in PyMol 1k2y_X2 ------VDILPRYFKQIR--DDIA--MAKP-MKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTN---TGTII-------------------------- 1k2y_X3 YPDRLL----------MLFA--KDVVSRNPGADIIFD--VKCT-RRLIALISGYGGRPVMWK---------T--------GHSLIKKKMKETGALLAGEMS-----GHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAF

FAST alignment superposition in PDB format colored superposition in PyMol 1k2y_X2 VDILPRYFKQIRDDIAMA-----------------KPMKVVVDCGNGVAG---VIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPEN--LKDLIAKVKAENADLGLAFDGDGDRV--GVVTN----TGTII-------------------------- 1k2y_X3 ------------------YPDRLLMLFAKDVVSRNPGADIIFDV------KCTRRLIALISGYGGRPVMWK-------------------TGHSLIKKKMKETGALLAGEM-------SGHVFF-KERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAF