d1pgja1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1pgj_A1	d1pgja1	A179-A324	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain	6-phosphogluconate dehydrogenase (6PGD)
1pgj_A2	d1pgja1	A325-A478	All alpha proteins	6-phosphogluconate dehydrogenase C-terminal domain-like	6-phosphogluconate dehydrogenase C-terminal domain-like	Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain	6-phosphogluconate dehydrogenase (6PGD)

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	101	0.09901	3.36675	49.50495	-10.13937
dali	100	0.18000	2.08480	72.25000	-7.33750
tm	117	0.15385	3.41771	62.39316	-11.09091
fast	97	0.16495	3.56152	58.50515	-9.32777

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1pgj_A1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLnndEVAAVLEDWKSKNFLKSYMLDISIAAARAKdkdgsyltehvmdrigsKGTGLWSAQEALE-IGVPAPSLNMAVVSRQFTMYKTERQanasnapgitqspgytlknkspsgp-------- 1pgj_A2 EIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFg-lNLPATIATFRAGCILQGYLLKPMTEAFEKNpnisnlmcafqteiragLQNYRDMVALITSkLEVSIPVLSASLNYVTAMFTPTLKYgqlvslqrdvfgrhgyervdkdgresfqwpelq

DALI alignment superposition in PDB format colored superposition in PyMol 1pgj_A1 gagsCVKMYHNSGEYAILQIWGEVFDILRAMG---lnndEVAAVLEDWKSKNFLKSYMLDISIAAARAKdkdgsYLTE----hvmdrIGSK-GTGLWSAQEALEIG-VPAPSLNMAVVSRQFTMYKT--------erqanasnapgitqspgytlknkspsgp 1pgj_A2 ----EIKQLYDSVCIAIISCYAQMFQCLREMDkvhnfglNLPATIATFRAGCILQGYLLKPMTEAFEKN-----PNISnlmcafqteIRAGlQNYRDMVALITSKLeVSIPVLSASLNYVTAMFTPTlkygqlvslqrdvfgrhgyervdkdgresfqwpelq

TM alignment superposition in PDB format colored superposition in PyMol 1pgj_A1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGL---NNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMD--RI--GS--KGTGLWSAQEALE-IGVPAPSLNMAVVSRQFTMYKTER-QAN--A----------SNA----P----------GITQSPGYTLKNKSPSGP 1pgj_A2 ----EIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKN-----PNISNLMCAF-QTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKY-GQLVSLQRDVFGRHGYERVDKDGRESFQWPELQ------------------

FAST alignment superposition in PDB format colored superposition in PyMol 1pgj_A1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDE---------VAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSK--------------------GTGLWSAQEALEI-GVPAPSLNMAVVSRQFTMY-----KTERQANASNAPGITQSPGYTLKNKSPSGP---------------------- 1pgj_A2 ----EIKQLYDSVCIAIISCYAQMFQCLREM------DKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFE--------------------KNPNISNLMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVF-------------------GRHGYERVDKDGRESFQWPELQ