d1qunb1

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
1qun_B1d1qunb1B1-B158All beta proteinsCommon fold of diphtheria toxin/transcription factors/cytochrome fBacterial adhesinsPilus subunitsMannose-specific adhesin FimH
1qun_B2d1qunb2B159-B279All beta proteinsCommon fold of diphtheria toxin/transcription factors/cytochrome fBacterial adhesinsPilus subunitsMannose-specific adhesin FimH

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual860.058143.9924352.32558-11.84148
dali1010.029702.7049758.16832-12.03515
tm1050.057142.9587256.90476-11.12075
fast840.059523.0219253.86905-9.77006

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1qun_B1   --FACKTAngtaipigggsaNVYVNLapvvnvgqnLVVDLstQIFCHNDYPetITDYVTL-----------QRGSAYGGVlsNFSGTVKYSGSSYPFpttsetprvvyNSRTDKPWPVALYLTPVSsaggvaikagslIAVLILRQTNNynsddfqfvwniyanndvvvpt
1qun_B2   ggCDVSARd-----------VTVTLPdy------pGSVPI--PLTVYCAKS--QNLGYYLsgttadagnsiFTNTASFSPaqGVGVQLTRNGTIIPAnntv---slgaVGTSAVSLGLTANYARTGgqvt----agnvQSIIGVTFVYQ----------------------

DALI alignment      superposition in PDB format     colored superposition in PyMol

1qun_B1   --FACKTAngtaipigggsanVYVNL-APVVnvgqnLVVDLstQIFCHNDYPetiTDYVTlQRGS---------AYGG----vlSNFSGTVKYSGSSYpfpTTSETPRVVYNSRTDKPWPVALYLTPV-SSAGGVAIkagslIAVLILRQTNnynsddfqfvwniyanndvvvpt
1qun_B2   ggCDVSAR-------------DVTVTlPDYP-----GSVPI--PLTVYCAKS---QNLGY-YLSGttadagnsiFTNTasfspaQGVGVQLTRNGTII---PANNTVSLGAVGTSAVSLGLTANYARTgGQVTAGNV----qSIIGVTFVYQ-----------------------

TM alignment      superposition in PDB format     colored superposition in PyMol

1qun_B1   --FACKTANGTAIPIGGGSANVYVN-LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGS--------A-YGG---VLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTP-VSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT
1qun_B2   GGCDVSAR-------------DVTVTLPDYP-----GSVPI-P-LTVYCAKS---QNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIP--A-NNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNV----QSIIGVTFVYQ-----------------------

FAST alignment      superposition in PDB format     colored superposition in PyMol

1qun_B1   --FACKTANGTAIPIGGGSANV-YVNLAPVVNVGQN-----LVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLS---------------------NFSGTVKYSGSSYPFPTTSET--PRVVYN--SRTDKPWPVALYLTPV-SSAGGVAIKAGSLI---AVLILRQTNNYNSDDFQFVWNIYANNDVVVPT
1qun_B2   GGCDVSAR--------------DVTVT---------LPDYPGSVPI--PLTVYCAK--SQNLGYYLS----------GTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIP-------ANNTVSLGAVGTSAVSLGLTANYARTGGQVTAG--------NVQSIIGVTFVYQ----------------------