d1qunb1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1qun_B1	d1qunb1	B1-B158	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	Pilus subunits	Mannose-specific adhesin FimH
1qun_B2	d1qunb2	B159-B279	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Bacterial adhesins	Pilus subunits	Mannose-specific adhesin FimH

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	86	0.05814	3.99243	52.32558	-11.84148
dali	101	0.02970	2.70497	58.16832	-12.03515
tm	105	0.05714	2.95872	56.90476	-11.12075
fast	84	0.05952	3.02192	53.86905	-9.77006

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 1qun_B1 --FACKTAngtaipigggsaNVYVNLapvvnvgqnLVVDLstQIFCHNDYPetITDYVTL-----------QRGSAYGGVlsNFSGTVKYSGSSYPFpttsetprvvyNSRTDKPWPVALYLTPVSsaggvaikagslIAVLILRQTNNynsddfqfvwniyanndvvvpt 1qun_B2 ggCDVSARd-----------VTVTLPdy------pGSVPI--PLTVYCAKS--QNLGYYLsgttadagnsiFTNTASFSPaqGVGVQLTRNGTIIPAnntv---slgaVGTSAVSLGLTANYARTGgqvt----agnvQSIIGVTFVYQ----------------------

DALI alignment superposition in PDB format colored superposition in PyMol 1qun_B1 --FACKTAngtaipigggsanVYVNL-APVVnvgqnLVVDLstQIFCHNDYPetiTDYVTlQRGS---------AYGG----vlSNFSGTVKYSGSSYpfpTTSETPRVVYNSRTDKPWPVALYLTPV-SSAGGVAIkagslIAVLILRQTNnynsddfqfvwniyanndvvvpt 1qun_B2 ggCDVSAR-------------DVTVTlPDYP-----GSVPI--PLTVYCAKS---QNLGY-YLSGttadagnsiFTNTasfspaQGVGVQLTRNGTII---PANNTVSLGAVGTSAVSLGLTANYARTgGQVTAGNV----qSIIGVTFVYQ-----------------------

TM alignment superposition in PDB format colored superposition in PyMol 1qun_B1 --FACKTANGTAIPIGGGSANVYVN-LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGS--------A-YGG---VLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTP-VSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 1qun_B2 GGCDVSAR-------------DVTVTLPDYP-----GSVPI-P-LTVYCAKS---QNLGYYLSGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIP--A-NNTVSLGAVGTSAVSLGLTANYARTGGQVTAGNV----QSIIGVTFVYQ-----------------------

FAST alignment superposition in PDB format colored superposition in PyMol 1qun_B1 --FACKTANGTAIPIGGGSANV-YVNLAPVVNVGQN-----LVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLS---------------------NFSGTVKYSGSSYPFPTTSET--PRVVYN--SRTDKPWPVALYLTPV-SSAGGVAIKAGSLI---AVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 1qun_B2 GGCDVSAR--------------DVTVT---------LPDYPGSVPI--PLTVYCAK--SQNLGYYLS----------GTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIP-------ANNTVSLGAVGTSAVSLGLTANYARTGGQVTAG--------NVQSIIGVTFVYQ----------------------