d1tbrr1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
1tbr_R1	d1tbrr1	R1-R55	Small proteins	Kazal-type serine protease inhibitors	Kazal-type serine protease inhibitors	Ovomucoid domain III-like	Blood-sucking insect-derived tryptase inhibitor
1tbr_R2	d1tbrr2	R56-R103	Small proteins	Kazal-type serine protease inhibitors	Kazal-type serine protease inhibitors	Ovomucoid domain III-like	Blood-sucking insect-derived tryptase inhibitor

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	46	0.41304	1.94421	84.23913	22.26880
dali	47	0.38298	2.06219	82.97872	22.58402
tm	45	0.40000	1.74967	89.44444	22.64202
fast	39	0.43590	1.15674	89.74359	27.12750

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

1tbr_R1   eggePC-ACP-HALHRVCGSDGETYSNPCTLNCAKFNGKPELVKVHDGPCEPdeded
1tbr_R2   ----VCqECDgDEYKPVCGSDDITYDNNCRLECASISSSPGVELKHEGPCRT-----

DALI alignment      superposition in PDB format     colored superposition in PyMol

1tbr_R1   eggEPCAC-PHALHRVCGSDGETYSNPCTLNCAKFNGKPELVKVHDGPCEPdeded
1tbr_R2   ---VCQECdGDEYKPVCGSDDITYDNNCRLECASISSSPGVELKHEGPCRT-----

TM alignment      superposition in PDB format     colored superposition in PyMol

1tbr_R1   EGGEPC-AC-PHALHRVCGSDGETYSNPCTLNCAKFN-GKPELVKVHDGPCEPDEDED
1tbr_R2   --V--CQECDGDEYKPVCGSDDITYDNNCRLECASISSSPG-VELKHEGPCRT-----

FAST alignment      superposition in PDB format     colored superposition in PyMol

1tbr_R1   EGGEPCACP-------HALHRVCGSDGETYSNPCTLNCAKFNGKPELVKVHDGPCEPDEDED--
1tbr_R2   ---------VCQECDGDEYKPVCGSDDITYDNNCRLECASISSSPGVELKHEGPC-------RT