d2bs2c1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
2bs2_C1	d2bs2c1	C1-C103	Membrane and cell surface proteins and peptides	Heme-binding four-helical bundle	Fumarate reductase respiratory complex transmembrane subunits	Fumarate reductase respiratory complex cytochrome b subunit, FrdC	Fumarate reductase respiratory complex cytochrome b subunit, FrdC
2bs2_C2	d2bs2c1	C104-C254	Membrane and cell surface proteins and peptides	Heme-binding four-helical bundle	Fumarate reductase respiratory complex transmembrane subunits	Fumarate reductase respiratory complex cytochrome b subunit, FrdC	Fumarate reductase respiratory complex cytochrome b subunit, FrdC

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	53	0.16981	2.60229	58.96226	13.92968
dali	71	0.12676	4.41125	45.42254	7.54659
tm	59	0.06780	3.14780	59.74576	-3.97336
fast	63	0.12698	6.03284	28.17460	-1.85169

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 2bs2_C1 mtnesilesysgvtperkksRMPAKLDWWQSATGLFLGLFMIGHMFFVSTillgdnvmlwvtkkfeldfifeggkpivVSFLAAFVFAVFIAHAFLAMRKFpi-------------------------------------------------------------- 2bs2_C2 ----nyrqyltfkthkdlmrHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTqpqt----------igpvsssfrmvsewMWPLYLVLLFAVELHGSVGLYRLavkwgwfdgetpdktranlkklktlmsaflivlglltfgayvkkgleqtdpnidykyfdykrth

DALI alignment superposition in PDB format colored superposition in PyMol 2bs2_C1 mtnesilesysgvtperkKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTIllgdnVMLW--VTKKFELDfifeggkpiVVSFLAAFVFAVFIAHAFLAMR-KFPI------------------------------------------------------------- 2bs2_C2 ----nyrqyltfkthkdlMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQ----pQTIGpvSSSFRMVS--------eWMWPLYLVLLFAVELHGSVGLYrLAVKwgwfdgetpdktranlkklktlmsaflivlglltfgayvkkgleqtdpnidykyfdykrth

TM alignment superposition in PDB format colored superposition in PyMol 2bs2_C1 -----------------------------------------------------------------------------------------MTNESILESYSGVTPER-KKS--RMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPI 2bs2_C2 NYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKW--GW-F-----DGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQT-DPNIDY-KYFD-YKR--TH-------------------------------

FAST alignment superposition in PDB format colored superposition in PyMol 2bs2_C1 MTNESILESYSGVTPERKKSRMPA---------------------------------------------------KLDWWQSATG-------------LFLGLFMIGH-MFFVSTILLG--------DNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPI--------------- 2bs2_C2 ------------------------NYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSF---RMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKW-GWFDGETPDKTRANLKKLKT----------LMSAFLIVLGLLTFGAYVKKGLEQT--DPNIDYKYFDYKRTH