d2bs2c1

DomainSCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP familyProtein
2bs2_C1d2bs2c1C1-C103Membrane and cell surface proteins and peptidesHeme-binding four-helical bundleFumarate reductase respiratory complex transmembrane subunitsFumarate reductase respiratory complex cytochrome b subunit, FrdCFumarate reductase respiratory complex cytochrome b subunit, FrdC
2bs2_C2d2bs2c1C104-C254Membrane and cell surface proteins and peptidesHeme-binding four-helical bundleFumarate reductase respiratory complex transmembrane subunitsFumarate reductase respiratory complex cytochrome b subunit, FrdCFumarate reductase respiratory complex cytochrome b subunit, FrdC

Alignment-based scores

AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual530.169812.6022958.9622613.92968
dali710.126764.4112545.422547.54659
tm590.067803.1478059.74576-3.97336
fast630.126986.0328428.17460-1.85169

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.


MANUAL alignment      superposition in PDB format     colored superposition in PyMol

2bs2_C1   mtnesilesysgvtperkksRMPAKLDWWQSATGLFLGLFMIGHMFFVSTillgdnvmlwvtkkfeldfifeggkpivVSFLAAFVFAVFIAHAFLAMRKFpi--------------------------------------------------------------
2bs2_C2   ----nyrqyltfkthkdlmrHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTqpqt----------igpvsssfrmvsewMWPLYLVLLFAVELHGSVGLYRLavkwgwfdgetpdktranlkklktlmsaflivlglltfgayvkkgleqtdpnidykyfdykrth

DALI alignment      superposition in PDB format     colored superposition in PyMol

2bs2_C1   mtnesilesysgvtperkKSRMPAKLDWWQSATGLFLGLFMIGHMFFVSTIllgdnVMLW--VTKKFELDfifeggkpiVVSFLAAFVFAVFIAHAFLAMR-KFPI-------------------------------------------------------------
2bs2_C2   ----nyrqyltfkthkdlMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQ----pQTIGpvSSSFRMVS--------eWMWPLYLVLLFAVELHGSVGLYrLAVKwgwfdgetpdktranlkklktlmsaflivlglltfgayvkkgleqtdpnidykyfdykrth

TM alignment      superposition in PDB format     colored superposition in PyMol

2bs2_C1   -----------------------------------------------------------------------------------------MTNESILESYSGVTPER-KKS--RMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPI
2bs2_C2   NYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKW--GW-F-----DGETPDKTRANLKKLKTLMSAFLIVLGLLTFGAYVKKGLEQT-DPNIDY-KYFD-YKR--TH-------------------------------

FAST alignment      superposition in PDB format     colored superposition in PyMol

2bs2_C1   MTNESILESYSGVTPERKKSRMPA---------------------------------------------------KLDWWQSATG-------------LFLGLFMIGH-MFFVSTILLG--------DNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFLAMRKFPI---------------
2bs2_C2   ------------------------NYRQYLTFKTHKDLMRHGDTTLWWIQAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSF---RMVSEWMWPLYLVLLFAVELHGSVGLYRLAVKW-GWFDGETPDKTRANLKKLKT----------LMSAFLIVLGLLTFGAYVKKGLEQT--DPNIDYKYFDYKRTH