d2dri_

d2dri__

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
2dri_A1	d2dri__	A1-A122	Alpha and beta proteins (a/b)	Periplasmic binding protein-like I	Periplasmic binding protein-like I	L-arabinose binding protein-like	D-ribose-binding protein
2dri_A2	d2dri__	A123-A271	Alpha and beta proteins (a/b)	Periplasmic binding protein-like I	Periplasmic binding protein-like I	L-arabinose binding protein-like	D-ribose-binding protein

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	114	0.13158	2.68936	67.32456	20.06032
dali	115	0.12174	2.64566	66.30435	17.32204
tm	119	0.12605	2.64146	67.85714	17.77067
fast	106	0.14151	2.32238	68.39623	23.98751

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 2dri_A1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL-VVLDSQNNPAKELANVQDLTVR--GTKILLINptDSDAVGNAVKMANQA---NIPVITLDRqat------kgEVVSHIASDNVLGGKIAGDYIAKKAGe----------------- 2dri_A2 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVlASQPADFDRIKGLNVMQNLLTAhpDVQAVFAQ--NDEMALGALRALQTAgksDVMVVGFDGtpdgekavndgKLAATIAQLPDQIGAKGVETADKVLKgekvqakypvdlklvvkq

DALI alignment superposition in PDB format colored superposition in PyMol 2dri_A1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL-VVLDSQNNPAKELANVQDLTV--RGTKILLINPtdsdavGNAVKMAN---QANIPVITLDR---QATK---gEVVSHIASDNVLGGKIAGDYIAKKAGE----------------- 2dri_A2 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVlASQPADFDRIKGLNVMQNLLTahPDVQAVFAQN--demaLGALRALQtagKSDVMVVGFDGtpdGEKAvndgKLAATIAQLPDQIGAKGVETADKVLKGekvqakypvdlklvvkq

TM alignment superposition in PDB format colored superposition in PyMol 2dri_A1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL-VVLDSQNNPAKELANVQDLTV-R-GTKILLINPTDSDAVGNAVKMAN--QAN-IPVITLDRQATK--G----EVVSHIASDNVLGGKIAGDYIAKKAG------------------E 2dri_A2 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQN-DE-MALGALRALQTAGKSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ-

FAST alignment superposition in PDB format colored superposition in PyMol 2dri_A1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLV-VLDSQNNPAKELANVQDLTVR--GTKILLINPTDSDAV-----GNAVKMANQAN---IPVITLDRQATKGE-------------VVSHIASDNVLGGKIAGDYIAKKAGE------------------- 2dri_A2 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQ-------NDEMALGALRALQTAGKSDVMVVGFD-------GTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL--KGEKVQAKYPVDLKLVVKQ