d2g3pa1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
2g3p_A1	d2g3pa1	A2-A105	All beta proteins	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p
2g3p_A2	d2g3pa2	A106-A219	All beta proteins	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p	N-terminal domains of the minor coat protein g3p

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	43	0.20930	4.88857	50.58140	0.04489
dali	47	0.17021	2.49432	70.21277	0.00001
tm	57	0.17544	3.62076	60.96491	-0.00990
fast	35	0.22857	1.96062	79.28571	0.17436

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 2g3p_A1 -------etvesclaKPHTEN--SFTNVWKDdkTLDRYANYEGCLWNATGVVVCTgdetqcyGTWVPIGlaipen----------------------peygdtpipgytyinp--- 2g3p_A2 ldgtyppgteqnpanPNPSLEesQPLNTFMF--QNNRFRNRQGALTVYTGTVTQGtdpvktyYQYTPVSskamydaywngkfrdcafhsgfnedpfvceyqgqssdlpqppvnaaa

DALI alignment superposition in PDB format colored superposition in PyMol 2g3p_A1 --------etvESCLaKPHTEN--SFTNVWKDdkTLDRYANYEGCLWNATGVvvctgdetqcyGTWVPIG--------------laIPEN-----------peygdtpipgytyinp 2g3p_A2 ldgtyppgteqNPAN-PNPSLEesQPLNTFMF--QNNRFRNRQGALTVYTGTvtqgtdpvktyYQYTPVSskamydaywngkfrdcAFHSgfnedpfvceyqgqssdlpqppvnaaa

TM alignment superposition in PDB format colored superposition in PyMol 2g3p_A1 ---------ETVESCLAKPHTEN--SFTNVWKDDKTLDRYANYEGCLWNATGVV---------VCTGDETQCYGTWVPIG----L--AI-----P--EN-PEYGDTPI-PG----------------------YTYINP 2g3p_A2 LDGTYPPGT-EQNPA-NPNPSLEESQPLNTFMF--QNNRFRNRQGALTVYTGTVTQGTDPVKT---------YYQYTPVSSKAMYDA-YWNGKFRDCAFHSGF----NE-DPFVCEYQGQSSDLPQPPVNAAA------

FAST alignment superposition in PDB format colored superposition in PyMol 2g3p_A1 ETVESCLA---------------KPHTE--NSFTNVWKDDKT-LDRYANYEGCLWNATGVVVCTGDETQCYG-------------TWVPIGLAIPENPEYGDTPIPGYTYINP------------------------------------------------ 2g3p_A2 --------LDGTYPPGTEQNPANPNPSLEESQPLNTFMF---QNNRFRNRQGALTVYTG-------------TVTQGTDPVKTYYQYTPV-----------------------SSKAMYDAYWNGKFRDCAFHSGFNEDPFVCEYQGQSSDLPQPPVNAAA