d7acn_2

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
7acn_A1	d7acn_2	A62-A192	Alpha and beta proteins (a/b)	Aconitase iron-sulfur domain	Aconitase iron-sulfur domain	Aconitase iron-sulfur domain	Aconitase A, N-terminal domain
7acn_A3	d7acn_2	A346-A475	Alpha and beta proteins (a/b)	Aconitase iron-sulfur domain	Aconitase iron-sulfur domain	Aconitase iron-sulfur domain	Aconitase A, N-terminal domain

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	93	0.07527	4.06905	52.41935	-5.29209
dali	105	0.06667	2.80054	63.33333	-8.40852
tm	112	0.05357	2.79606	62.94643	-8.21664
fast	95	0.05263	2.88331	63.42105	-5.79552

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment superposition in PDB format colored superposition in PyMol 7acn_A1 lrLRPDRVAMQ------DATAQMAMLQFISSG--lPKVAVPSTIHCDhlieaqlgGEKDLRRAKDINqevynfLATAGAKYGVGFWRPGsgiihqi--ilenyayPGVLLIGTDShtp---ngggLGGICIGVGGADAVDVMAG 7acn_A3 wpLDIRVGLIGsctnssYEDMGRSAAVAKQALahgLKCKSQFTITPG--------SEQIRATIERDG------YAQVLRDVGGIVLANAcgpcigqwdrkdikkgEKNTIVTSYNrnftgrndanPETHAFVTSPEIVTALAIA

DALI alignment superposition in PDB format colored superposition in PyMol 7acn_A1 lrLRPDRVAMQ------dATAQMAMLQFISSG--LPKVAVPSTIHCDHLIeaqlggekdlrrakdinQEVYN-FLATAGAKYGVGFWRPgSGIIHQiiLENY-----ayPGVLLIGTDSHtPNGG----GLGGICIGVGGADAVDVMAG 7acn_A3 wpLDIRVGLIGsctnssyEDMGRSAAVAKQALahGLKCKSQFTITPGSEQ---------------irATIERdGYAQVLRDVGGIVLAN-ACGPCI--GQWDrkdikkgEKNTIVTSYNR-NFTGrndaNPETHAFVTSPEIVTALAIA

TM alignment superposition in PDB format colored superposition in PyMol 7acn_A1 LRLRPDRVAMQ----DA--TAQMAMLQFISS-GL-PKVAVPSTIHCDHLIEAQLGGEKDLRRAKDIN-QEVYN-FLATAGAKYGVGFWRPGSGII-HQIILENY--A-YP-GVLLIGTDSHTP--NGGGLG-GICIGVGGADAVDVMAG 7acn_A3 WPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITP-GS--------------E-QIRATIERDGYAQVLRDVGGIVLAN--ACGPCI-GQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIA

FAST alignment superposition in PDB format colored superposition in PyMol 7acn_A1 LRL---RPDRVAMQ-------DATAQMAMLQFISS-GLP-KVAVPSTIHCDHLIEAQLGGEKDLRRAKDIN------QEVYNF-LATAGAKYGVGFWRPGSG-IIHQIILEN------YAYP--GVLLIGTDSHTPNGGGL-------GGICIGVGGADAVDVMAG 7acn_A3 ---WPLDIRVGLI-GSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITP---------------------GSEQIRATIERDGYAQVLRDVGGIVLANA--CGPCI-----GQWDRKDIKKGEKNTIVTSYNRNFT----GRNDANPETHAFVTSPEIVTALAIA