d8gep_1

Domain	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP family	Protein
8gep_A1	d8gep_1	A81-A145	Alpha and beta proteins (a+b)	Ferredoxin-like	Sulfite reductase, domains 1 and 3	Sulfite reductase, domains 1 and 3	Sulfite reductase, domains 1 and 3
8gep_A2	d8gep_2	A346-A425	Alpha and beta proteins (a+b)	Ferredoxin-like	Sulfite reductase, domains 1 and 3	Sulfite reductase, domains 1 and 3	Sulfite reductase, domains 1 and 3

Alignment-based scores

Aligner	Aligned Length	Sequence Identity	RMSD	GDT-TS	COMPASS
manual	55	0.21818	1.92946	75.90909	25.95834
dali	58	0.17241	2.22808	67.67241	25.55296
tm	58	0.17241	2.17280	70.68966	23.98230
fast	53	0.18868	1.87702	69.81132	28.10602

In the alignments below, two upper-case letters are aligned, and two lower-case letters are NOT aligned. The superposition files are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A. The coordinates of the first domain are transformed, while the coordinates of the second domain are the same as in the original PDB file.

MANUAL alignment      superposition in PDB format     colored superposition in PyMol

8gep_A1   -----------LLRCRLPGGVIT-------TKQWQAIDKFAGentiyGSIRLTNRQTFQFHGIL-----PVHQMLHSVGLDAL--
8gep_A2   igwvkgiddnwHLTLFIENGRILdyparplKTGLLEIAKIHK-----GDFRITANQNLIIAGVPesekaKIEKIAKESGLMNAvt

DALI alignment      superposition in PDB format     colored superposition in PyMol

8gep_A1   -----------LLRCRLPGGVITT----KQWQAIDKFAgENTIYgSIRLTNRQTFQFHGIL-----PVHQMLHSVGLDAL--
8gep_A2   igwvkgiddnwHLTLFIENGRILDyparPLKTGLLEIA-KIHKG-DFRITANQNLIIAGVPesekaKIEKIAKESGLMNAvt

TM alignment      superposition in PDB format     colored superposition in PyMol

8gep_A1   -----------LLRCRLPGGVITT----KQWQAIDKFAGENTIYGSIRLTNRQTFQFHGIL----P-VHQMLHSVGLDAL--
8gep_A2   IGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHK-G-DFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVT

FAST alignment      superposition in PDB format     colored superposition in PyMol

8gep_A1   -----------LLRCRLPGGVITT-----KQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILP------VHQMLHSVGLDAL-----
8gep_A2   IGWVKGIDDNWHLTLFIENGRIL-DYPARPLKTGLLEIAK-IHKG-DFRITANQNLIIAGVP-ESEKAKIEKIAKESGL---MNAVT