MALISAM is a database of pairwise, structure-based alignments for structurally analogous motifs in proteins.
Homology and analogy are two alternative scenarios to explain structural similarities among proteins. Homologs inherit similar features from their common ancestor, while analogs converge to similar structures due to a limited number of energetically favorable ways to pack secondary structural elements.
Analogous pairs in this database are in three categories: a hybrid motif and a core motif, an interface motif and a core motif, an artificial protein and a natural protein.
During evolution, a protein family usually preserves a common core while accumulating insertions and deletions in the periphery. A core motif is composed entirely of secondary structure elements belonging to the evolutionary core. A hybrid motif consists of both core elements and peripheral insertions that are not present in the majority of the family members. An interface motif uses secondary structural elements from two or more domains or subunits contacting along that interface.
Reference: H. Cheng, B. Kim, and N. Grishin (2008). MALISAM: a database of structurally analogous motifs in proteins. Nucleic Acids Research Database Issue. 36:D211-217
To download the whole database, click here.
(a): The core region of the SCOP superfamily "glyoxalase/bleomycin resistance protein/dihydroxybiphenyl dioxygenase" is in blue.
(b) and (c): The core region of the SCOP superfamily "periplasmic binding protein-like II" is in green. The insertion is in red.
In (a), the motif framed in yellow is a core motif, while in (b), the motif framed in yellow is a hybrid motif.
The table below lists all the analogous pairs in this database. Pairs are grouped in three categories: a hybrid motif and a core motif, an interface motif and a core motif, an artificial protein and a natural protein. The manual and automatic alignments and superpositions can be viewed by clicking the pair names in the 2nd column.
| # | PAIR | SCOPid | RANGE | SCOP CLASS | SCOP SUPERFAMILY |
|---|---|---|---|---|---|
| A hybrid motif and a core motif | |||||
| 1 | d1a2za_d1ghha_ | d1a2za_ | A74-A81,A114-A138,A159-A220 | a/b | Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |
| d1ghha_ | A1-A12,A13-A46,A47-A81 | a+b | DNA damage-inducible protein DinI | ||
| 2 | d1a2za_d1u9da_ | d1a2za_ | A75-A81,A114-A138,A159-A220,A61-A74 | a/b | Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) |
| d1u9da_ | A1-A9,A10-A48,A49-A84,A85-A107 | a+b | Tautomerase/MIF | ||
| 3 | d1a7j__d1kafa_ | d1a7j__ | 203-279 | a/b | P-loop containing nucleoside triphosphate hydrolases |
| d1kafa_ | A104-A211 | a+b | DNA-binding C-terminal domain of the transcription factor MotA | ||
| 4 | d1a7j__d2if1__ | d1a7j__ | 203-279 | a/b | P-loop containing nucleoside triphosphate hydrolases |
| d2if1__ | 1-126 | a+b | eIF1-like | ||
| 5 | d1ac5__d1jroa3 | d1ac5__ | 407-483 | a/b | alpha/beta-Hydrolases |
| d1jroa3 | A346-A462 | a+b | CO dehydrogenase flavoprotein C-terminal domain-like | ||
| 6 | d1ac5__d1vk0a_ | d1ac5__ | 373-446 | a/b | alpha/beta-Hydrolases |
| d1vk0a_ | A1-A206 | a/b | Ribonuclease H-like | ||
| 7 | d1adja2d1drw_2 | d1adja2 | A134-A167,A229-A289 | a+b | Class II aaRS and biotin synthetases |
| d1drw_2 | 131-163,164-240 | a+b | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | ||
| 8 | d1b05a_d1lc0a2 | d1b05a_ | A9-A24,A31-A46,A188-A207,A217-A227 | a/b | Periplasmic binding protein-like II |
| d1lc0a2 | A129-A159,A160-A180,A181-A207,A208-A246 | a+b | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | ||
| 9 | d1b05a_d1nkia_ | d1b05a_ | A9-A24,A31-A46,A188-A207,A217-A227 | a/b | Periplasmic binding protein-like II |
| d1nkia_ | A1-A13,A14-A25,A26-A43,A44-A57 | a+b | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | ||
| 10 | d1b0pa2d1k0da2 | d1b0pa2 | A1034-A1078,A1095-A1120 | a/b | Thiamin diphosphate-binding fold (THDP-binding) |
| d1k0da2 | A109-A161,A162-A200 | a/b | Thioredoxin-like | ||
| 11 | d1b62a2d1i6pa_ | d1b62a2 | A39-A50,A162-A216 | a+b | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| d1i6pa_ | A90-A137,A138-A215 | a/b | beta-carbonic anhydrase, cab | ||
| 12 | d1ce8a6d1di2a_ | d1ce8a6 | A243-A255,A352-A402 | a+b | Glutathione synthetase ATP-binding domain-like |
| d1di2a_ | A112-A140,A141-A180 | a+b | dsRNA-binding domain-like | ||
| 13 | d1chma1d1g62a_ | d1chma1 | A62-A118 | a/b | Creatinase/prolidase N-terminal domain |
| d1g62a_ | A12-A100 | a+b | Pentein | ||
| 14 | d1cs1a_d1q8ia1 | d1cs1a_ | A68-A88,A190-A233 | a/b | PLP-dependent transferases |
| d1q8ia1 | A39-A60,A61-A109 | a/b | Ribonuclease H-like | ||
| 15 | d1d7ba_d1svb_2 | d1d7ba_ | A38-A128 | all b | CBD9-like |
| d1svb_2 | 1-302 | membrane | Viral glycoprotein, central and dimerisation domains | ||
| 16 | d1dc1a_d1nf2a_ | d1dc1a_ | A135-A206 | a/b | Restriction endonuclease-like |
| d1nf2a_ | A81-A189 | a/b | HAD-like | ||
| 17 | d1dc1a_d1rblm_ | d1dc1a_ | A135-A164,A165-A206 | a/b | Restriction endonuclease-like |
| d1rblm_ | M2-M51,M64-M122 | a+b | RuBisCO, small subunit | ||
| 18 | d1dmza_d1hdha_ | d1dmza_ | A596-A605,A615-A654,A666-A674,A706-A730 | all b | SMAD/FHA domain |
| d1hdha_ | A447-A462,A463-A479,A480-A493,A494-A527 | a/b | Alkaline phosphatase-like | ||
| 19 | d1ds1a_d1tig__ | d1ds1a_ | A2-A8,A43-A105,A153-A166,A265-A275 | all b | Clavaminate synthase-like |
| d1tig__ | 83-94,95-145,146-158,159-170 | a+b | Translation initiation factor IF3, C-terminal domain | ||
| 20 | d1dzka_d1qd1b2 | d1dzka_ | A10-A25,A96-A157 | all b | Lipocalins |
| d1qd1b2 | B2181-B2210,B2211-B2326 | a+b | Formiminotransferase domain of formiminotransferase-cyclodeaminase. | ||
| 21 | d1dzta_d1kpf__ | d1dzta_ | A1-A46,A67-A79,A107-A116 | all b | RmlC-like cupins |
| d1kpf__ | 16-89,90-106,107-126 | a+b | HIT-like | ||
| 22 | d1e3pa3d1gpqa_ | d1e3pa3 | A3-A57,A116-A151 | a+b | Ribosomal protein S5 domain 2-like |
| d1gpqa_ | A2-A89,A90-A128 | a+b | Inhibitor of vertebrate lysozyme, Ivy | ||
| 23 | d1e3pa3d1tis__ | d1e3pa3 | A3-A44,A128-A151,A221-A253 | a+b | Ribosomal protein S5 domain 2-like |
| d1tis__ | 134-178,179-204,105-133 | a+b | Thymidylate synthase/dCMP hydroxymethylase | ||
| 24 | d1ecfa2d1unnc_ | d1ecfa2 | A1-A75 | a+b | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| d1unnc_ | C241-C351 | a+b | Lesion bypass DNA polymerase (Y-family), little finger domain | ||
| 25 | d1efdn_d1d1ra_ | d1efdn_ | N174-N241 | a/b | "Helical backbone" metal receptor |
| d1d1ra_ | A29-A111 | a+b | eIF1-like | ||
| 26 | d1efdn_d1r0va3 | d1efdn_ | N174-N241 | a/b | "Helical backbone" metal receptor |
| d1r0va3 | A140-A214 | a+b | tRNA-intron endonuclease N-terminal domain-like | ||
| 27 | d1ert__d1jr3d2 | d1ert__ | 1-61 | a/b | Thioredoxin-like |
| d1jr3d2 | D17-D117 | a/b | P-loop containing nucleoside triphosphate hydrolases | ||
| 28 | d1fbxa_d1o08a_ | d1fbxa_ | A1-A22,A74-A87,A133-A169 | a+b | Tetrahydrobiopterin biosynthesis enzymes-like |
| d1o08a_ | A1014-A1035,A1036-A1046,A1047-A1092 | a/b | HAD-like | ||
| 29 | d1fy2a_d1qmha1 | d1fy2a_ | A1-A31,A114-A120,A192-A209 | a/b | Class I glutamine amidotransferase-like |
| d1qmha1 | A185-A218,A219-A231,A232-A279 | a/b | RNA 3'-terminal phosphate cyclase, RPTC, insert domain | ||
| 30 | d1g99a1d1gqyb3 | d1g99a1 | A11-A80 | a/b | Actin-like ATPase domain |
| d1gqyb3 | B244-B321 | a/b | MurD-like peptide ligases, catalytic domain | ||
| 31 | d1g99a1d1izna_ | d1g99a1 | A1-A80 | a/b | Actin-like ATPase domain |
| d1izna_ | A117-A281 | multi | Subunits of heterodimeric actin filament capping protein Capz | ||
| 32 | d1gc5a_d1omha_ | d1gc5a_ | A346-A389,A423-A467 | a/b | Ribokinase-like |
| d1omha_ | A2-A132,A133-A293 | a+b | Origin of replication-binding domain, RBD-like | ||
| 33 | d1gx3a_d1epaa_ | d1gx3a_ | A85-A185 | a+b | Cysteine proteinases |
| d1epaa_ | A3-A162 | all b | Lipocalins | ||
| 34 | d1gx3a_d1pbya5 | d1gx3a_ | A85-A185 | a+b | Cysteine proteinases |
| d1pbya5 | A166-A273 | all b | Quinohemoprotein amine dehydrogenase A chain, domain 3 | ||
| 35 | d1h0hb_d1hz6b_ | d1h0hb_ | B1-B14,B157-B214 | a+b | 4Fe-4S ferredoxins |
| d1hz6b_ | B2-B13,B14-B64 | a+b | Immunoglobulin-binding domains | ||
| 36 | d1h6da2d1kjka_ | d1h6da2 | A213-A229,A337-A367 | a+b | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| d1kjka_ | A40-A59,A11-A39 | a+b | DNA-binding domain | ||
| 37 | d1hbnb2d1aisb2 | d1hbnb2 | B49-B60,B73-B100,B117-B163 | a+b | Methyl-coenzyme M reductase subunits |
| d1aisb2 | B1200-B1220,B1221-B1242,B1243-B1300 | all a | Cyclin-like | ||
| 38 | d1hi9a_d1rpua_ | d1hi9a_ | A119-A145,A210-A225,A245-A274 | a/b | Dipeptide transport protein |
| d1rpua_ | A55-A104,A105-A118,A119-A152 | a+b | Tombusvirus P19 core protein, VP19 | ||
| 39 | d1hrda1d1rp3a3 | d1hrda1 | A195-A226,A369-A424 | a/b | NAD(P)-binding Rossmann-fold domains |
| d1rp3a3 | A1-A36,A37-A87 | all a | Sigma2 domain of RNA polymerase sigma factors | ||
| 40 | d1htjf_d1gnla_ | d1htjf_ | F335-F375,F465-F487 | all a | Regulator of G-protein signaling, RGS |
| d1gnla_ | A1-A79,A80-A135 | multi | Prismane protein-like | ||
| 41 | d1htjf_d1nhua_ | d1htjf_ | F320-F352,F441-F487 | all a | Regulator of G-protein signaling, RGS |
| d1nhua_ | A386-A477,A478-A563 | multi | DNA/RNA polymerases | ||
| 42 | d1i9ea_d1mzka_ | d1i9ea_ | A28-A96 | all b | Immunoglobulin |
| d1mzka_ | A177-A298 | all b | SMAD/FHA domain | ||
| 43 | d1i9ea_d1nppa1 | d1i9ea_ | A28-A96 | all b | Immunoglobulin |
| d1nppa1 | A51-A131 | all b | N-utilization substance G protein NusG, insert domain | ||
| 44 | d1ihoa_d1ep7a_ | d1ihoa_ | A1-A23,A49-A57,A71-A95 | a/b | Nucleotidylyl transferase |
| d1ep7a_ | A1-A24,A25-A35,A36-A112 | a/b | Thioredoxin-like | ||
| 45 | d1is8a_d1umwa1 | d1is8a_ | A115-A151,A189-A201,A211-A241 | a+b | Tetrahydrobiopterin biosynthesis enzymes-like |
| d1umwa1 | A407-A438,A439-A446,A447-A500 | a+b | Polo-box domain | ||
| 46 | d1j22a_d1m2aa_ | d1j22a_ | A5-A50,A116-A135 | a/b | Restriction endonuclease-like |
| d1m2aa_ | A1-A77,A78-A103 | a/b | Thioredoxin-like | ||
| 47 | d1jdbc2d1r9ca_ | d1jdbc2 | C262-C280,C322-C356 | a/b | Class I glutamine amidotransferase-like |
| d1r9ca_ | A1-A27,A28-A65 | a+b | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | ||
| 48 | d1jnwa_d1ew4a_ | d1jnwa_ | A47-A57,A99-A116,A186-A218,A19-A46 | all b | FMN-binding split barrel |
| d1ew4a_ | A1-A36,A37-A56,A57-A82,A83-A106 | a+b | Frataxin-like | ||
| 49 | d1k2fa_d1svb_2 | d1k2fa_ | A152-A231,A269-A282 | all b | TRAF domain-like |
| d1svb_2 | 1-269,270-302 | membrane | Viral glycoprotein, central and dimerisation domains | ||
| 50 | d1l6ra_d1ir6a_ | d1l6ra_ | A36-A82,A148-A164 | a/b | HAD-like |
| d1ir6a_ | A329-A402,A403-A433 | a/b | DHH phosphoesterases | ||
| 51 | d1l6ra_d1nrva_ | d1l6ra_ | A36-A82,A148-A164 | a/b | HAD-like |
| d1nrva_ | A429-A502,A503-A533 | a+b | SH2 domain | ||
| 52 | d1lci__d1lla_1 | d1lci__ | 83-99,20-41,52-74 | multi | Acetyl-CoA synthetase-like |
| d1lla_1 | 30-68,69-84,85-109 | all a | Hemocyanin, N-terminal domain | ||
| 53 | d1lwda_d1a5t_1 | d1lwda_ | A17-A36,A328-A373,A393-A413 | a/b | Isocitrate/Isopropylmalate dehydrogenase-like |
| d1a5t_1 | 208-237,238-305,306-329 | all a | DNA polymerase III clamp loader subunits, C-terminal domain | ||
| 54 | d1miwa2d1gyfa_ | d1miwa2 | A20-A27,A36-A47,A102-A131 | a+b | Nucleotidyltransferase |
| d1gyfa_ | A25-A33,A34-A47,A48-A86 | a+b | GYF domain | ||
| 55 | d1n7va_d1izna_ | d1n7va_ | A353-A418 | all b | Adsorption protein p2 |
| d1izna_ | A117-A281 | multi | Subunits of heterodimeric actin filament capping protein Capz | ||
| 56 | d1nf2a_d1ptma_ | d1nf2a_ | A99-A127,A128-A153 | a/b | HAD-like |
| d1ptma_ | A146-A202,A258-A289 | a/b | Isocitrate/Isopropylmalate dehydrogenase-like | ||
| 57 | d1nkta3d1ldja1 | d1nkta3 | A106-A123,A57-A96 | a/b | P-loop containing nucleoside triphosphate hydrolases |
| d1ldja1 | A687-A724,A725-A776 | all a | "Winged helix" DNA-binding domain | ||
| 58 | d1o02a_d1ihna_ | d1o02a_ | A20-A31,A54-A73,A186-A224 | a/b | ALDH-like |
| d1ihna_ | A9-A52,A53-A69,A70-A121 | a/b | Hypothetical protein MT938 (MTH938) | ||
| 59 | d1o17d2d1ir6a_ | d1o17d2 | D182-D248,D280-D303 | a/b | Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |
| d1ir6a_ | A329-A403,A404-A433 | a/b | DHH phosphoesterases | ||
| 60 | d1o17d2d1jyra_ | d1o17d2 | D182-D248,D280-D303 | a/b | Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |
| d1jyra_ | A56-A120,A121-A151 | a+b | SH2 domain | ||
| 61 | d1ogqa_d1fjgc1 | d1ogqa_ | A1-A87 | a/b | L domain-like |
| d1fjgc1 | C2-C106 | a+b | Prokaryotic type KH domain (KH-domain type II) | ||
| 62 | d1ogsa2d1dq3a4 | d1ogsa2 | A1-A20,A97-A116,A400-A415 | a/b | (Trans)glycosidases |
| d1dq3a4 | A227-A264,A265-A280,A281-A335 | a+b | Homing endonucleases | ||
| 63 | d1ogsa2d1is1a_ | d1ogsa2 | A1-A20,A97-A116,A400-A415 | a/b | (Trans)glycosidases |
| d1is1a_ | A29-A70,A71-A86,A87-A105 | a+b | Ribosome recycling factor, RRF | ||
| 64 | d1ovma1d1914_2 | d1ovma1 | A185-A210,A302-A341 | a/b | DHS-like NAD/FAD-binding domain |
| d1914_2 | 2001-2023,2024-2097 | a+b | Signal recognition particle alu RNA binding heterodimer, SRP9/14 | ||
| 65 | d1p5gx1d1xppa_ | d1p5gx1 | X9-X48,X99-X142 | a/b | Phosphoglucomutase, first 3 domains |
| d1xppa_ | A7-A44,A45-A105 | a+b | RBP11-like subunits of RNA polymerase | ||
| 66 | d1pdz_1d1b66a_ | d1pdz_1 | 145-250 | a/b | Enolase C-terminal domain-like |
| d1b66a_ | A7-A144 | a+b | Tetrahydrobiopterin biosynthesis enzymes-like | ||
| 67 | d1pdz_1d1irum_ | d1pdz_1 | 145-250 | a/b | Enolase C-terminal domain-like |
| d1irum_ | M33-M116 | a+b | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | ||
| 68 | d1piea1d1nxha_ | d1piea1 | A96-A119,A131-A180 | a+b | Ribosomal protein S5 domain 2-like |
| d1nxha_ | A107-A126,A3-A106 | all a | Hypothetical protein MTH393 | ||
| 69 | d1piea1d1q0qa1 | d1piea1 | A96-A119,A131-A180 | a+b | Ribosomal protein S5 domain 2-like |
| d1q0qa1 | A371-A398,A301-A370 | all a | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain | ||
| 70 | d1qd1b1d1itwa_ | d1qd1b1 | B2083-B2180 | a+b | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| d1itwa_ | A166-A379 | a/b | Isocitrate/Isopropylmalate dehydrogenase-like | ||
| 71 | d1qd1b1d1n62c2 | d1qd1b1 | B2083-B2180 | a+b | Formiminotransferase domain of formiminotransferase-cyclodeaminase. |
| d1n62c2 | C1-C61 | a+b | FAD-binding domain | ||
| 72 | d1qh4a2d1ekga_ | d1qh4a2 | A137-A179,A207-A269 | a+b | Glutamine synthetase/guanido kinase |
| d1ekga_ | A90-A129,A130-A208 | a+b | Frataxin-like | ||
| 73 | d1qnia1d1k4za_ | d1qnia1 | A472-A524,A565-A581 | all b | Cupredoxins |
| d1k4za_ | A1368-A1406,A1407-A1524 | all b | C-terminal domain of adenylylcyclase associated protein | ||
| 74 | d1slca_d1sq9a_ | d1slca_ | A24-A115 | all b | Concanavalin A-like lectins/glucanases |
| d1sq9a_ | A286-A395 | all b | WD40 repeat-like | ||
| 75 | d1st6a8d1gvna_ | d1st6a8 | A875-A942,A1007-A1065 | all a | alpha-catenin/vinculin |
| d1gvna_ | A3-A60,A61-A89 | all a | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | ||
| 76 | d1st6a8d1r5id_ | d1st6a8 | A875-A942,A1007-A1065 | all a | alpha-catenin/vinculin |
| d1r5id_ | D1-D94,D95-D128 | all a | Superantigen MAM | ||
| 77 | d1tv8a_d1nbwb_ | d1tv8a_ | A13-A67,A265-A314 | a/b | Radical SAM enzymes |
| d1nbwb_ | B5-B58,B59-B117 | a/b | B12-dependent dehydatase associated subunit | ||
| 78 | d1tv8a_d1t3ea3 | d1tv8a_ | A160-A259 | a/b | Radical SAM enzymes |
| d1t3ea3 | A499-A653 | a/b | Molybdenum cofactor biosynthesis proteins | ||
| 79 | d1ukfa_d1gsa_2 | d1ukfa_ | A166-A268 | a+b | Cysteine proteinases |
| d1gsa_2 | 123-206 | a+b | Glutathione synthetase ATP-binding domain-like | ||
| 80 | d1uoua1d1fs1b1 | d1uoua1 | A65-A104,A187-A227 | all a | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| d1fs1b1 | B43-B95,B96-B140 | all a | Skp1 dimerisation domain-like | ||
| 81 | d1ur3m_d1k87a1 | d1ur3m_ | M215-M255,M263-M297 | a/b | NAD(P)-linked oxidoreductase |
| d1k87a1 | A138-A199,A200-A261 | all a | N-terminal domain of bifunctional PutA protein | ||
| 82 | d1uyra1d1vkka_ | d1uyra1 | A1529-A1628,A1795-A1817 | a/b | ClpP/crotonase |
| d1vkka_ | A6-A127,A128-A142 | a+b | Actin depolymerizing proteins | ||
| 83 | d1uyrb1d1a79a1 | d1uyrb1 | B1484-B1628 | a/b | ClpP/crotonase |
| d1a79a1 | A83-A179 | a/b | tRNA-intron endonuclease catalytic domain-like | ||
| 84 | d1vaoa2d1no5a_ | d1vaoa2 | A6-A41,A71-A95,A117-A123 | a+b | FAD-binding domain |
| d1no5a_ | A6-A40,A41-A74,A75-A105 | a+b | Nucleotidyltransferase | ||
| 85 | d1vk3a3d1lbu_2 | d1vk3a3 | A167-A186,A239-A267,A306-A325 | a+b | PurM C-terminal domain-like |
| d1lbu_2 | 157-166,167-189,190-213 | a+b | Hedgehog/DD-peptidase | ||
| 86 | d1vk3a3d1w2ia_ | d1vk3a3 | A167-A186,A239-A267,A306-A325 | a+b | PurM C-terminal domain-like |
| d1w2ia_ | A2-A16,A17-A40,A41-A91 | a+b | Acylphosphatase-like | ||
| 87 | d2csta_d1j4wa1 | d2csta_ | A74-A124,A247-A298 | a/b | PLP-dependent transferases |
| d1j4wa1 | A1-A33,A34-A74 | a+b | Eukaryotic type KH-domain (KH-domain type I) | ||
| 88 | d2gaw.1d1nppa1 | d2gaw.1 | A3-A12,B152-B205,B248-B290 | a+b | N-terminal nucleophile aminohydrolases (Ntn hydrolases) |
| d1nppa1 | A51-A59,A60-A80,A81-A131 | all b | N-utilization substance G protein NusG, insert domain | ||
| 89 | d2onea1d1hz6b_ | d2onea1 | A142-A219 | a/b | Enolase C-terminal domain-like |
| d1hz6b_ | B2-B64 | a+b | Immunoglobulin-binding domains | ||
| 90 | d3pmga1d1e8ca1 | d3pmga1 | A54-A89,A167-A190 | a/b | Phosphoglucomutase, first 3 domains |
| d1e8ca1 | A3-A67,A68-A103 | a/b | MurE/MurF N-terminal domain | ||
| 91 | d6mhta_d1vm0b_ | d6mhta_ | A71-A176 | a/b | S-adenosyl-L-methionine-dependent methyltransferases |
| d1vm0b_ | B20-B122 | a+b | AlbA-like | ||
| An interface motif and a core motif | |||||
| 92 | d1a05a_d1dgsa3 | d1a05a_ | A82-A110,A126-A136,A241-A280 | a/b | Isocitrate/Isopropylmalate dehydrogenase-like |
| d1dgsa3 | A89-A118,A249-A259,A260-A314 | a+b | DNA ligase/mRNA capping enzyme, catalytic domain | ||
| 93 | d1a05a_d1j71a_ | d1a05a_ | A100-A110,A126-A137,A241-A281 | a/b | Isocitrate/Isopropylmalate dehydrogenase-like |
| d1j71a_ | A192-A205,A206-A221,A222-A334 | all b | Acid proteases | ||
| 94 | d1a05a_d1rblm_ | d1a05a_ | A82-A110,A126-A137,A241-A281 | a/b | Isocitrate/Isopropylmalate dehydrogenase-like |
| d1rblm_ | M2-M51,M64-M77,M78-M122 | a+b | RuBisCO, small subunit | ||
| 95 | d1aa7a_d1b68a_ | d1aa7a_ | A51-A88,A120-A158 | all a | Influenza virus matrix protein M1 |
| d1b68a_ | A23-A85,A86-A162 | all a | Apolipoprotein | ||
| 96 | d1aa7a_d1qkra_ | d1aa7a_ | A1-A16,A51-A88,A120-A158 | all a | Influenza virus matrix protein M1 |
| d1qkra_ | A881-A914,A915-A973,A974-A1061 | all a | alpha-catenin/vinculin | ||
| 97 | d1aora2d1dkza2 | d1aora2 | A54-A97,A155-A188 | a+b | Aldehyde ferredoxin oxidoreductase, N-terminal domain |
| d1dkza2 | A389-A464,A465-A506 | all b | Heat shock protein 70kD (HSP70), peptide-binding domain | ||
| 98 | d1axn__d1nkta3 | d1axn__ | 77-110,269-284 | all a | Annexin |
| d1nkta3 | A1-A56,A57-A82 | a/b | P-loop containing nucleoside triphosphate hydrolases | ||
| 99 | d1axn__d1sf9a_ | d1axn__ | 77-110,269-284 | all a | Annexin |
| d1sf9a_ | A11-A55,A56-A80 | all b | Hypothetical protein YfhH | ||
| 100 | d1b3qa2d1bia_2 | d1b3qa2 | A540-A572,A607-A640 | all b | CheW-like |
| d1bia_2 | 271-294,295-317 | all b | C-terminal domain of transcriptional repressors | ||
| 101 | d1b6ra1d1k8kd1 | d1b6ra1 | A178-A196,A278-A287,A313-A339,A340-A355 | all b | Rudiment single hybrid motif |
| d1k8kd1 | D26-D51,D52-D89,D90-D120,D1-D25 | a+b | Arp2/3 complex subunits | ||
| 102 | d1b6ra1d1v97a4 | d1b6ra1 | A178-A196,A278-A287,A313-A355 | all b | Rudiment single hybrid motif |
| d1v97a4 | A415-A444,A445-A459,A460-A528 | a+b | CO dehydrogenase flavoprotein C-terminal domain-like | ||
| 103 | d1eg3a1d1paqa_ | d1eg3a1 | A121-A144,A195-A250 | all a | EF-hand |
| d1paqa_ | A544-A582,A583-A704 | all a | ARM repeat | ||
| 104 | d1gxja_d1p5dx3 | d1gxja_ | A527-A539,A615-A658 | a+b | Smc hinge domain |
| d1p5dx3 | X258-X276,X277-X356 | a/b | Phosphoglucomutase, first 3 domains | ||
| 105 | d1h5wa_d2cbla2 | d1h5wa_ | A126-A158,A201-A229,B126-B158,B201-B229 | multi | Upper collar protein gp10 (connector protein) |
| d2cbla2 | A47-A77,A78-A104,A105-A143,A144-A177 | all a | N-terminal domain of cbl (N-cbl) | ||
| 106 | d1izna_d1keka2 | d1izna_ | A7-A42,B2-B33 | multi | Subunits of heterodimeric actin filament capping protein Capz |
| d1keka2 | A868-A918,A919-A955 | a/b | Thiamin diphosphate-binding fold (THDP-binding) | ||
| 107 | d1k9ka_d1abv__ | d1k9ka_ | A2-A28,A69-A90,B2-B28,B69-B90 | all a | EF-hand |
| d1abv__ | 1-22,23-50,51-84,85-105 | all a | N-terminal domain of the delta subunit of the F1F0-ATP synthase | ||
| 108 | d1knza_d1rp3a3 | d1knza_ | A7-A58,B7-B58 | multi | NSP3 homodimer |
| d1rp3a3 | A1-A58,A59-A86 | all a | Sigma2 domain of RNA polymerase sigma factors | ||
| 109 | d1knza_d1vola1 | d1knza_ | A7-A58,B7-B58 | multi | NSP3 homodimer |
| d1vola1 | A113-A151,A152-A207 | all a | Cyclin-like | ||
| 110 | d1m9na2d1j27a_ | d1m9na2 | A235-A278,A412-A439,A440-A450 | a/b | Cytidine deaminase-like |
| d1j27a_ | A16-A62,A63-A98,A1-A15 | a+b | Hypothetical protein TT1725 | ||
| 111 | d1mk5a_d1efub2 | d1mk5a_ | A66-A99,A100-A116,B66-B99,B100-B116 | all b | Avidin/streptavidin |
| d1efub2 | B55-B85,B123-B139,B140-B164,B245-B269 | a+b | Elongation factor Ts (EF-Ts), dimerisation domain | ||
| 112 | d1mw5a_d1bco_1 | d1mw5a_ | A13-A19,A118-A130,A141-A153,B13-B19,B118-B130,B141-B153 | a+b | Hypothetical protein HI1480 |
| d1bco_1 | 481-499,500-509,510-526,527-539,540-550,551-560 | all b | mu transposase, C-terminal domain | ||
| 113 | d1n00a_d1aa7a_ | d1n00a_ | A88-A118,A246-A280 | all a | Annexin |
| d1aa7a_ | A1-A35,A36-A74 | all a | Influenza virus matrix protein M1 | ||
| 114 | d1okra_d1m98a1 | d1okra_ | A92-A123,B92-B122 | all a | "Winged helix" DNA-binding domain |
| d1m98a1 | A17-A52,A131-A164 | all a | Orange carotenoid protein, N-terminal domain | ||
| 115 | d1okra_d1v9da_ | d1okra_ | A73-A108,B73-B108 | all a | "Winged helix" DNA-binding domain |
| d1v9da_ | A829-A865,A866-A960 | all a | Formin homology 2 domain (FH2 domain) | ||
| 116 | d1omoa_d1i7b.1 | d1omoa_ | A34-A47,A48-A59,A60-A76,B34-B47,B48-B59,B60-B76 | a/b | NAD(P)-binding Rossmann-fold domains |
| d1i7b.1 | B4-B23,A103-A119,A153-A166,A171-A185,A276-A289,A316-A328 | a+b | S-adenosylmethionine decarboxylase | ||
| 117 | d1izna_d1gkza1 | d1izna_ | A7-A42,B2-B33 | multi | Subunits of heterodimeric actin filament capping protein Capz |
| d1gkza1 | A64-A104,A127-A174 | all a | alpha-ketoacid dehydrogenase kinase, N-terminal domain | ||
| 118 | d1ps6a_d1f9za_ | d1ps6a_ | A112-A123,A133-A156,A280-A299 | a/b | Isocitrate/Isopropylmalate dehydrogenase-like |
| d1f9za_ | A1-A14,A15-A36,A37-A69 | a+b | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | ||
| 119 | d1qo0d_d1hjp_1 | d1qo0d_ | D87-D102,E2-E13,E108-E130 | a/b | CheY-like |
| d1hjp_1 | 158-172,173-187,188-203 | all a | DNA helicase RuvA subunit, C-terminal domain | ||
| 120 | d1r2ja2d1ecmb_ | d1r2ja2 | A49-A89,A207-A251 | multi | Acyl-CoA dehydrogenase NM domain-like |
| d1ecmb_ | B6-B67,B68-B100 | all a | Chorismate mutase II | ||
| 121 | d1rwha2d1n67a2 | d1rwha2 | A462-A526,A642-A709 | all b | Hyaluronate lyase-like, C-terminal domain |
| d1n67a2 | A370-A499,A500-A560 | all b | Bacterial adhesins | ||
| 122 | d1smta_d1b7ta4 | d1smta_ | A28-A59,A101-A121,B28-B59,B101-B120 | all a | "Winged helix" DNA-binding domain |
| d1b7ta4 | A323-A364,A371-A402,A410-453,A591-A624 | a/b | P-loop containing nucleoside triphosphate hydrolases | ||
| 123 | d1st6a2d1jqna_ | d1st6a2 | A183-A253,A652-A717 | all a | alpha-catenin/vinculin |
| d1jqna_ | A256-A340,A341-A391 | a/b | Phosphoenolpyruvate/pyruvate domain | ||
| 124 | d1izna_d2gsca_ | d1izna_ | A7-A42,B2-B33 | multi | Subunits of heterodimeric actin filament capping protein Capz |
| d2gsca_ | A9-A63,A68-A125 | ||||
| An artificial protein and a natural protein | |||||
| 125 | d1lq7a_d1gqea_ | d1lq7a_ | A1-A67 | design | Designed single chain three-helix bundle |
| d1gqea_ | A4-A117 | multi | Release factor | ||
| 126 | d1oi2a_d1uw1a_ | d1oi2a_ | A20-A87 | a/b | DAK1/DegV-like |
| d1uw1a_ | A7-A73 | design | In vitro evolution products | ||
| 127 | d1pqsa_d1i7la2 | d1pqsa_ | A778-A854 | a+b | CAD & PB1 domains |
| d1i7la2 | A246-A312 | a+b | Glutathione synthetase ATP-binding domain-like | ||
| 128 | d1pqsa_d1poh__ | d1pqsa_ | A778-A854 | a+b | CAD & PB1 domains |
| d1poh__ | 1-85 | a+b | HPr-like | ||
| 129 | d1qysa_d1i7b.1 | d1qysa_ | A3-A13,A14-A94 | design | New fold designs |
| d1i7b.1 | B4-B23,A74-A166 | a+b | S-adenosylmethionine decarboxylase | ||
| 130 | d1uw1a_d1q9ua_ | d1uw1a_ | A7-A73 | design | In vitro evolution products |
| d1q9ua_ | A1-A127 | a+b | TT1751-like | ||
Comments and suggestions to: grishin@chop.swmed.edu
Last updated on 2008-02-08