d1ac5__d1jroa3

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1ac5__h	d1ac5__	407-483	Alpha and beta proteins (a/b)	alpha/beta-Hydrolases	alpha/beta-Hydrolases	Serine carboxypeptidase-like	Serine carboxypeptidase II
1jro_Ac	d1jroa3	A346-A462	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	Xanthine dehydrogenase chain A, domain 4

Justification for analogy
The motif in 1ac5: four strands are insertions to the Rossmann core, while one strand and the helix belong to the Rossmann core. Hybrid motif, but the b-a-b connection in this motif is left-handed.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ac5__h   sDDAVSFDWIHkskstddsEEFSGYVKYDR---------NLTFVSVynash-----------------------------------mvpfdKSLVSRGIVDIYSNdvmiidnngknvmitt-
1jro_Ac   -PGLRCYKLSKrf----dqDISAVCGCLNLtlkgskietARIAFGGmagvpkraaafeaaligqdfredtiaaalpllaqdftplsdmrasAAYRMNAAQAMALRyvrelsgeavavlevmp

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ac5__h   sddAVSFDWIHKsKSTDDSEE-fSGYVKYDR-----NLTFVSVYNASH------------------------------MVPFD----------KSLVSRGIVDIYSND----vMIIDNngknvmitt
1jro_Ac   ---PGLRCYKLS-KRFDQDISavCGCLNLTLkgskiETARIAFGGMAGvpkraaafeaaligqdfredtiaaalpllaQDFTPlsdmrasaayRMNAAQAMALRYVRElsgeaVAVLE------vmp

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ac5__h   SDDAVSFDWIHKSKSTDDSE---E-FSGYVKYDR----N-LTFVSVYNAS-------------------------------HMVPFD----------KSLVSRGIVDIYSNDV-----MII-----DNNGKNVMITT
1jro_Ac   ---PGLRCYKLS----KRFDQDISAVCGCLNLTLKGSKIETARIAFGGMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDF-TPLSDMRASAAYRMNAAQAMALRY-VRELSGEAVAVLEVMP-----------

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1ac5__h   SD-DAVSFDWIHKSKSTDDSE--EFSGYVKYDRN-----------LTFVSVYNASHMVPFDK-----------------------------------------------SLVSRGIVDIYSNDVMIIDNNGKNVMITT------------------
1jro_Ac   --PGLRCYKL--SKRFD----QDISAVCGCLN--LTLKGSKIETARIAFG------------GMAGVPKRAAAFEAALIGQDFREDTIAAALPLLAQDFTPLSDMRASAAYRMNAAQAMAL-----------------RYVRELSGEAVAVLEVMP