d1adja2d1drw_2

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1adj_Ah	d1adja2	A134-A167,A229-A289	Alpha and beta proteins (a+b)	Class II aaRS and biotin synthetases	Class II aaRS and biotin synthetases	Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain	Histidyl-tRNA synthetase (HisRS)
1drw__c	d1drw_2	131-163,164-240	Alpha and beta proteins (a+b)	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	Dihydrodipicolinate reductase-like	Dihydrodipicolinate reductase

Justification for analogy
The motif in 1adj: comparing d1adja2 and d1bia_3 (different family same superfamily), the helix and the second strand are insertion. hybrid. the inserted beta-strand is short.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1adj_Ah   seNPILDAEAVVLLYECLKElglrRLKVKLSSVG----lgeeaRAHLKEVERHLERLS---------------------VPYELEpALVRGldyyvRTAFEVHHEeigaqsaLGGGGRYD---
1drw__c   -vGVNVMLKLLEKAAKVMGD----YTDIEIIEAHhrhk-vdapSGTALAMGEAIAHALdkdlkdcavysreghtgervpGTIGFA-TVRAGdi-vgEHTAMFADI-----geRLEITHKAssr

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1adj_Ah   sENPILDAEAVVLLYECLkelglrRLKVKLSSVG---LGEEaRAHLKEVERHLERLS---------------------vPYELEPAlvrgldyyVRTAFEVHHeeigAQSAlGGGGRYD---
1drw__c   -VGVNVMLKLLEKAAKVM----gdYTDIEIIEAHhrhKVDApSGTALAMGEAIAHALdkdlkdcavysreghtgervpgTIGFATV--ragdivGEHTAMFAD----IGER-LEITHKAssr

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1adj_Ah   SENPILDAEAVVLLYECLKELGL-RRL-KVKLSSVGLGEEARAHLKEVERHLERLSV------P-------------------YELEPA----LVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYD--
1drw__c   V----GVNVM-LKLLEKAAK-VMGDYTDIEIIEAHHRHK--VDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGD-------IVGEHTAMFADIG---ERLEITHKASSR

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1adj_Ah   SENPIL-DAEAVVLLYECLKELGLR----RLKVKLSSVGLGEEARAHLK--------EVERHLERLSV-----------------------------PYELEPALVRGLDYYVR-----TAFEVHHEEI-GAQSAL--GGGGRYD-
1drw__c   ------VGVNVMLKLLEKAAKVM--GDYTDIEIIEAHH-----------RHKVDAPSGTALAMGEA--IAHALDKDLKDCAVYSREGHTGERVPGTIGFATVR-----------AGDIVGEHTAMFA--DIGER--LEITHKASSR