d1b0pa2d1k0da2

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1b0p_Ah	d1b0pa2	A1034-A1078,A1095-A1120	Alpha and beta proteins (a/b)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	PFOR PP module	Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI
1k0d_Ac	d1k0da2	A109-A161,A162-A200	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	Glutathione S-transferase (GST), N-terminal domain	Yeast prion protein ure2p, nitrogen regulation fragment

Justification for analogy
The motif in 1b0p: hybrid, since the C-terminal beta-hairpin is absent in d1b0pa1, which is the other module on the same chain and in the same superfamily.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1b0p_Ah   ---YVYVATVSMGysKQQFLKVLKEAESFPGPSLVIAYAtcinqglrk--------ywpLFRYDPRLAaqgknPFQLDskap----------------
1k0d_Ac   qplEGYTLFSHRS--APNGFKVAIVLSELGFHYNTIFLDfnlgehrapefvsvnpnarvPALIDHGMD----nLSIWEsgaillhlvnkyyketgnpl

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1b0p_Ah   ---YVYVATVSMGysKQQFLKVLKEAESFPGPSLVIAYATC-------inqglrkYWPL-FRYDPRLAaqgknPFQLDS----------------kap
1k0d_Ac   qplEGYTLFSHRS--APNGFKVAIVLSELGFHYNTIFLDFNlgehrapefvsvnpNARVpALIDHGMD----nLSIWESgaillhlvnkyyketgnpl

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1b0p_Ah   ---YVYVATVS-MGYSKQQFLKVLKEAESFPGPSLVIAYAT-CINQ-GLRKYW-----------P-L-FRYDPRLA-AQGKNPFQLD--------------------SKAP
1k0d_Ac   QPLEGYTLFSHRS--AP-NGFKVAIVLSELGFHYNTIFLDFN---LG----EHRAPEFVSVNPNARVPALIDHG-MD----NLSIWESGAILLHLVNKYYKETGNPL----

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1b0p_Ah   ---YVYVATVSMGYSKQQFLKVLKEAESFP-GPSLVIAYATCINQGLRKYWP-------------------LFRYDPRLAAQGKNPFQLDSKAP---------------------------
1k0d_Ac   QPLEGYTLFSHRS-APNGFKVAIVLSEL--GFHYNTIFLDF-----------NLGEHRAPEFVSVNPNARVPALIDHGM---------------DNLSIWESGAILLHLVNKYYKETGNPL