d1dc1a_d1rblm_

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1dc1_Ah	d1dc1a_	A135-A164,A165-A206	Alpha and beta proteins (a/b)	Restriction endonuclease-like	Restriction endonuclease-like	Restriction endonuclease BsobI	Restriction endonuclease BsobI
1rbl_Mc	d1rblm_	M2-M51,M64-M122	Alpha and beta proteins (a+b)	RuBisCO, small subunit	RuBisCO, small subunit	RuBisCO, small subunit	Ribulose 1,5-bisphosphate carboxylase-oxygenase

Justification for analogy
The motif in 1dc1: compared to d1ckqa_ (same superfamiliy), two strands are insertion;

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   ----------------galaQQKLTRAIISALDIANIPYKWLDSrd----kkyTNWM--DKPED-----dyELETFA--------KGISWTIN--GKH-RTLMYnitvsl
1rbl_Mc   smktlpkerrfetfsylpplSDRQIAAQIEYMIEQGFHPLIEFNehsnpeefyWTMWklPLFACaapqqvlDEVRECrseygdcyIRVAGFDNikECQtSSFIVhrpgr-

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   ----------------galAQQKLTRAIISALDIANIPYKWL-----dsrdkKYTNW-MDKPE--DDYELET-----------faKGISWTI--NGKHR-TLMYNITVSl
1rbl_Mc   smktlpkerrfetfsylppLSDRQIAAQIEYMIEQGFHPLIEfnehsnpeefYWTMWkLPLFAcaAPQQVLDevrecrseygdcyIRVAGFDniKECQTsSFIVHRPGR-

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   --------------------GALAQQKLTRAIISALDIANIPYKWLDSRDKKY-----------T-NWMDKPEDDY-ELETF-A------------KGISWT-INGKHR-TLMYNIT---VSL
1rbl_Mc   SMKTLPKERRFETFSYLPPLSDRQIAAQIEYMIEQG----F-HPLIE-----FNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNIKE-CQTSSFIVHRPGR---

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   GALAQ---------------------QKLTRAIISALDIANIPYKWLDSRDKKYTNWMDKPEDDYE--------------------------LETFAK-------------GISWTINGKH-------RTLMYNITVSL---
1rbl_Mc   -----SMKTLPKERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF------------------NEHSNPEEFYWTMWKLPLFACAAPQQVLDE--VRECRSEYGDCYIRVAGFD----NIKECQTSSFIVHR----PGR