d1dc1a_d1rblm_

Motif
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SCOPidRangeSCOP ClassSCOP FoldSCOP SuperfamilySCOP FamilyProtein
1dc1_Ah
d1dc1a_A135-A164,A165-A206Alpha and beta proteins (a/b)Restriction endonuclease-likeRestriction endonuclease-likeRestriction endonuclease BsobIRestriction endonuclease BsobI
1rbl_Mc
d1rblm_M2-M51,M64-M122Alpha and beta proteins (a+b)RuBisCO, small subunitRuBisCO, small subunitRuBisCO, small subunitRibulose 1,5-bisphosphate carboxylase-oxygenase

Justification for analogy
The motif in 1dc1: compared to d1ckqa_ (same superfamiliy), two strands are insertion;


Alignment-based scores
AlignerAligned LengthSequence IdentityRMSDGDT-TSCOMPASS
manual550.054553.4363751.81818-1.10121
dali610.065574.2522652.45902-0.89594
tm580.051723.0961956.03448-0.79686
fast390.051282.6385564.74359-0.81391

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   ----------------galaQQKLTRAIISALDIANIPYKWLDSrd----kkyTNWM--DKPED-----dyELETFA--------KGISWTIN--GKH-RTLMYnitvsl
1rbl_Mc   smktlpkerrfetfsylpplSDRQIAAQIEYMIEQGFHPLIEFNehsnpeefyWTMWklPLFACaapqqvlDEVRECrseygdcyIRVAGFDNikECQtSSFIVhrpgr-

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   ----------------galAQQKLTRAIISALDIANIPYKWL-----dsrdkKYTNW-MDKPE--DDYELET-----------faKGISWTI--NGKHR-TLMYNITVSl
1rbl_Mc   smktlpkerrfetfsylppLSDRQIAAQIEYMIEQGFHPLIEfnehsnpeefYWTMWkLPLFAcaAPQQVLDevrecrseygdcyIRVAGFDniKECQTsSFIVHRPGR-

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   --------------------GALAQQKLTRAIISALDIANIPYKWLDSRDKKY-----------T-NWMDKPEDDY-ELETF-A------------KGISWT-INGKHR-TLMYNIT---VSL
1rbl_Mc   SMKTLPKERRFETFSYLPPLSDRQIAAQIEYMIEQG----F-HPLIE-----FNEHSNPEEFYWTMWKLPLFACAAPQQVLDEVRECRSEYGDCYIRVAGFDNIKE-CQTSSFIVHRPGR---

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dc1_Ah   GALAQ---------------------QKLTRAIISALDIANIPYKWLDSRDKKYTNWMDKPEDDYE--------------------------LETFAK-------------GISWTINGKH-------RTLMYNITVSL---
1rbl_Mc   -----SMKTLPKERRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEF------------------NEHSNPEEFYWTMWKLPLFACAAPQQVLDE--VRECRSEYGDCYIRVAGFD----NIKECQTSSFIVHR----PGR