d1dzka_d1qd1b2

Motif (click icon to enlarge)	SCOPid	Range	SCOP Class	SCOP Fold	SCOP Superfamily	SCOP Family	Protein
1dzk_Ah	d1dzka_	A10-A25,A96-A157	All beta proteins	Lipocalins	Lipocalins	Retinol binding protein-like	Odorant-binding protein
1qd1_Bc	d1qd1b2	B2181-B2210,B2211-B2326	Alpha and beta proteins (a+b)	Ferredoxin-like	Formiminotransferase domain of formiminotransferase-cyclodeaminase.	Formiminotransferase domain of formiminotransferase-cyclodeaminase.	Formiminotransferase domain of formiminotransferase-cyclodeaminase.

Justification for analogy
The motif in 1dzk: the last strand and the helix come from C-termianl extension, and the remaining part comes from the lipocalin core. Hybrid motif.

In the alignments below, two upper-case letters are aligned, while two lower-case letters are NOT aligned. The two sequences in an alignment are NOT continuous in most cases (see their ranges). The superpositions are re-constructed from the corresponding alignments by minimizing the overall RMSD. In a PDB-format superposition file, the first domain is represented by chain S and the second domain is represented by chain A.

MANUAL alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dzk_Ah   felsgKWITsYIGSSD---------------------------TALIISNINVDeegDKTIMTGLLGKGTDI--EDQDLEKFKEVTRENGIPEENIVNIIErddcpa------------------------------------------------
1qd1_Bc   -----FLLA-FNINLLstreqahrialdlreqgrgkdqpgrlkKVQAIGWYLDE---KNLAQVSTNLLDFEVtgLHTVFEETCREAQELSLPVVGSQLVGLvplkalldaaafycekenlfllqdehrirlvvnrlgldslapfkpkeriieylv

DALI alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dzk_Ah   felsgkwITSYIGSSD---------------------------TALIISNINVDeegdKTIMTGLLGKgtdIEDQDLEKFKEVTRENG----iPEENIVNIIE----------------------------------------------rDDCP--a
1qd1_Bc   ------fLLAFNINLLstreqahrialdlreqgrgkdqpgrlkKVQAIGWYLDE---kNLAQVSTNLL--dFEVTGLHTVFEETCREAqelslPVVGSQLVGLvplkalldaaafycekenlfllqdehrirlvvnrlgldslapfkpkeRIIEylv

TM alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dzk_Ah   ------------------------------------FELSG-------------KWI--TSYIGSSDTA---L-II--SN-IN--VD-------EEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIP-E----E--NI--V-NIIERDD-------------CPA
1qd1_Bc   FLLAFNINLLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLDEKNLAQVSTNLL--------DFEVTGLHTVFEETCREA-QELSLPVV---------GSQL-VGLVPLKALLDAAAFYCEKENLFLLQDEHRIRLVVNRLGLDSLAPFKPKERIIEYLV---

FAST alignment     PDB format superposition    aligned motifs in PyMol   whole structures in PyMol

1dzk_Ah   FELSGKWITS----YIGSSDT------------------------------ALIISNINVDEEGDK---TIMTGLLGKGTDIE------DQDLEKFKEVTRENGIPEEN--IVNIIERDDCPA-------------------------------------------------------
1qd1_Bc   ----------FLLAFNIN---LLSTREQAHRIALDLREQGRGKDQPGRLKKVQAIGWYLD------EKNLAQVSTNLLD----FEVTGLHTVFEETCREAQELSLPV--VGSQLVG-------LVPLKALLDAAAFYCEKENLFLLQDEHRIRLVVNRLGLDSLAPFKPKERIIEYLV